Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0031
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230...    34   0.087
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    29   2.5  
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531...    29   2.5  
04_01_0111 - 1136354-1136793,1136878-1136959,1137574-1137657,113...    29   4.3  

>06_03_0611 -
           22721977-22722276,22722765-22722853,22722978-22723083,
           22723178-22723306,22723803-22723887,22723994-22724103,
           22724424-22724624,22725033-22725394,22725612-22725695,
           22725791-22725916,22725999-22726161,22726378-22726536,
           22727147-22727274,22727371-22727493,22727755-22727899,
           22727992-22728068,22728318-22728696,22729325-22729411
          Length = 950

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 17/78 (21%), Positives = 36/78 (46%)
 Frame = +1

Query: 259 DLEYSLGHKIAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKIEIDPA 438
           D   S+GHK +FL + K   + + TW +  +    +  +H+    + +D +K +  +D  
Sbjct: 561 DHSASVGHKSSFLSLIKNLLKKNPTWRRVSINEVVNDAVHVE--MVKQDIIKERETVDQV 618

Query: 439 TQMDAGVYECTADNMYSI 492
            Q  +  Y    D++  +
Sbjct: 619 LQQQSSGYAVVCDDLKKV 636


>09_04_0501 +
           18153252-18153453,18153973-18154224,18154809-18155015,
           18155198-18157046,18157334-18157381,18158222-18158291,
           18158380-18158475,18158583-18158621,18158714-18158924,
           18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
 Frame = +1

Query: 253 TFDLEYSLGHKIAFLCIAKGNPRPHITWFKDGVEIFAH------HYLHIHEWPI 396
           TF + +  G +     + K  P P + W +      AH      H+ H H+W +
Sbjct: 109 TFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHHQWTL 162


>05_04_0375 +
           20750170-20751011,20751707-20751865,20752894-20753146,
           20753287-20753316
          Length = 427

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 248 PVKSLLHHYYCSIGRILGLGTCP*SATRSAPSTWSCSWV 132
           P K      Y   GR+L LGT   +A R+A  TW+ SWV
Sbjct: 275 PTKLFEMGCYFQSGRVLKLGTSVEAAFRTALETWA-SWV 312


>04_01_0111 -
           1136354-1136793,1136878-1136959,1137574-1137657,
           1137749-1137931,1138263-1138437,1138539-1138777
          Length = 400

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +1

Query: 229 WSKDFTGLTFDLEYSLGHKI-----AFLCIAKGNPRPHI 330
           W + F     D EY +G +I      + C+ KG PRP +
Sbjct: 196 WVRKFPFFCSDREYIIGRRIWASGKTYYCVTKGVPRPSV 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,428,894
Number of Sequences: 37544
Number of extensions: 335031
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)