Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0031
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02730.1 68414.m00226 cellulose synthase family protein simil...    29   3.6  
At1g17390.1 68414.m02122 hypothetical protein                          28   4.8  

>At1g02730.1 68414.m00226 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-4 [gi:9622880]
           from Zea mays
          Length = 1181

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 131 RPRSRTKSKVQIGLPITGKYRDPESD 208
           RP++  K   ++ LPI G+Y + E+D
Sbjct: 767 RPKAMMKKDDEVSLPINGEYNEEEND 792


>At1g17390.1 68414.m02122 hypothetical protein
          Length = 272

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 242 KSLLHHYYCSIGRILGLGTCP*SATRSAPSTWSCSW 135
           KSLL   Y ++G  + +  CP + T S    W   W
Sbjct: 20  KSLLEWIYANLGEEIEINGCPWAVTFSQAIWWGWKW 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,362,046
Number of Sequences: 28952
Number of extensions: 268295
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)