Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0024
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 30 0.33
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 30 0.33
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 28 1.0
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.3
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.1
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 26 4.1
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +2
Query: 380 SIVPSTDQDLREPIRDHI-AELRTEL--ETMRXSITSQAREHVRADRCYSRS 526
++ P ++DL +P+RD+I E R +L E+ S S + H R R +SRS
Sbjct: 158 TLSPKDEKDLLDPMRDYIHREKRRKLKHESSDRSDKSDSNRHSRHHRRHSRS 209
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -2
Query: 190 QSSRAVALDSLIIFSTSVSVASAICSEPDNLLFLMSATNLPTVSMCFSLNS 38
++S V S+I+ T+++VA ++ S P N+ SA N + + +LNS
Sbjct: 176 KNSNHVFATSIILIVTAIAVALSLESFPSNIERYFSAVNHSAIELSDALNS 226
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 326 EGVGESLQGLXLATPARHSIVPSTDQDLREPIRDHIAELRTELETMRXSITSQAREHVR 502
E VG S Q L+ ++ S ++ R + D IAELR + T+R S + ++
Sbjct: 411 EPVGLSTQEQNLSPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELK 469
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 382 HRAFNGSGLEGTYKRSHRRAXNRAGDNEXVHNESGPRARA 501
+ +F+GSGL G + HR + G + H +S P A +
Sbjct: 134 YNSFHGSGLGGLFPNIHRELESH-GFSLPTHEQSSPVAES 172
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 72 KFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARE 185
K V D N LS +Q+ + L+EK + + ATA E
Sbjct: 1040 KLVNDAALNSLSNRQQLLDEAADLIEKDLEFAGATAIE 1077
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 413 PSSPDPLKARCCAGPESPXPDLGDSLLHPHHSGTGLRK 300
PS+P P + P P P +LL H+GT L+K
Sbjct: 1728 PSAPPP-PLPASSAPSVPNPGDRSALLQQIHTGTRLKK 1764
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 578 AVPILGRPQDRSTRALAPNVSSTCPPARARGPDSLWTXSLSPARFXALRCD 426
++PI R R+LA +S PP + G D + SL A + D
Sbjct: 8 SIPITARLPSLGIRSLATATASAHPPVQLYGLDGSYASSLYTAAVKESKLD 58
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 273 KTLLIM*SLPAPVVNLS*YDERPHGGLHKVPV 178
+ LL++ P+P YDE H ++KVP+
Sbjct: 572 RKLLVILVHPSPYFECVFYDETSHSSVYKVPL 603
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -2
Query: 187 SSRAVALDSLIIFSTSVSVASAICSEPDNLLFLMSATNLPTVSMCFSLNSIS 32
SS A S STS+S +S I S ++L SAT + + S L+S S
Sbjct: 19 SSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSS 70
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 9.5
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -2
Query: 253 IATSSSGKLELIRRAAARRTPQSSRAVALDSLIIFST-SVSVASAICSEPDNLLFLMSAT 77
+AT+S+ AAA T S+ +VA S+ ST SV+ ASA S ++ + S T
Sbjct: 991 VATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIA-VASVT 1049
Query: 76 NLPTVSMCFSLNSISKDSKXA 14
T S+ + + S S A
Sbjct: 1050 GSSTSSVATASATDSSTSSVA 1070
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,750
Number of Sequences: 5004
Number of extensions: 49696
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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