Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0024
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 34 0.085
10_08_0108 + 14860469-14861032 32 0.34
01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338... 31 0.60
01_05_0242 + 19828521-19829252 31 1.1
01_05_0116 - 18294960-18295078,18295967-18296102,18297167-182972... 29 3.2
10_01_0313 + 3447065-3448204 29 4.2
08_02_0826 - 21583507-21583555,21584000-21584679 29 4.2
07_03_0619 + 20009837-20010331,20010437-20010875,20010974-200111... 29 4.2
03_02_0941 - 12589537-12590109,12590196-12590390,12590521-12590718 29 4.2
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 28 5.6
08_01_1010 - 10215625-10216335,10216372-10216473 28 5.6
09_02_0258 - 6380702-6380758,6380767-6380794,6381352-6381467,638... 28 7.4
08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991 28 7.4
06_03_0969 - 26413534-26413594,26415020-26415318 28 7.4
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939... 28 7.4
04_03_1017 + 21747044-21748051 28 7.4
03_01_0564 - 4176177-4178096 28 7.4
02_05_1035 + 33659965-33660155,33660992-33661066,33661634-336616... 28 7.4
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 9.8
10_02_0178 + 6241231-6241292,6245238-6245505 27 9.8
07_03_0621 + 20025998-20026492,20026598-20027036,20027135-200273... 27 9.8
>03_03_0001 + 13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 34.3 bits (75), Expect = 0.085
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +1
Query: 298 SFRRPVPEW*GCRRESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAXNRAGDNEXVHN 477
SF++ + G R ES SGD GP Q RA + L + S ++ G++ +
Sbjct: 763 SFQKKLSLLFGMRSESGSKSSGDGGPTQ-RASALAALSSAFNPSSQK---NKGNDRPKSS 818
Query: 478 ESGPRARAGGQVLLT--FGASALVERS*GRPRIGTARSSS 591
+ GP RA LT F SA + R G+ R+++
Sbjct: 819 DGGPTQRASAMAALTSAFNPSAKPKSPPQRAGQGSQRAAA 858
>10_08_0108 + 14860469-14861032
Length = 187
Score = 32.3 bits (70), Expect = 0.34
Identities = 29/97 (29%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Frame = +1
Query: 328 GCRRESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAXNRAGDNEXVHNESGPRAR--- 498
G RR+ R G D PA RA G G R GD + + A
Sbjct: 52 GYRRDRRRGGVDDGVPANPRAGRGGGRRCDVDEGDSDVDRRTGDEQQPAGDGAVAATPLD 111
Query: 499 AGGQ---VLLTF-GASALVERS*GRPRIGTARSSSRK 597
AGG VL G E + G PR+ TAR + +
Sbjct: 112 AGGNAPPVLPALNGGQPGEEEAAGTPRVATARPAGTR 148
>01_06_0280 +
28129750-28129868,28130677-28131145,28133605-28133802,
28134168-28134412,28134749-28134907,28135491-28135578,
28135983-28136264
Length = 519
Score = 31.5 bits (68), Expect = 0.60
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 611 PTSSP--FRDDDLAVPILGRPQDRSTRALAPNVSSTCPPARARGPDSLWTXS 462
PTSSP F D D+ P P R TR + S+ A ARGP T S
Sbjct: 108 PTSSPAPFDDPDVWAPPRDTPNRRPTRGQSSTRKSSQDGAWARGPSKTGTPS 159
>01_05_0242 + 19828521-19829252
Length = 243
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 331 CRRESPRSGSGDSGPAQHRAFNGSG 405
CRR+ R G+GD PA+ RA G G
Sbjct: 72 CRRDRGRGGAGDGVPAKLRAGRGGG 96
>01_05_0116 -
18294960-18295078,18295967-18296102,18297167-18297275,
18298027-18298070,18298305-18298372,18298625-18298695,
18299068-18300005
Length = 494
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -1
Query: 506 PPARARGPDSLWTXSLSPARFXA----LRCDLL*VPSSPDPLKARCCAG 372
PP RG L T S SPAR A LRC L S PDPL+ G
Sbjct: 34 PPRGLRGARRL-TLSPSPARRRARSLHLRCRLSDSASDPDPLRVAFACG 81
>10_01_0313 + 3447065-3448204
Length = 379
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 614 SPTSSPFRDDDLAVPILGR-PQDRSTRALAPNVSSTC 507
SP+ SP DDDL IL R P D ST P S+ C
Sbjct: 22 SPSPSPLDDDDLLQEILLRLPPDAST---LPTASAVC 55
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 355 GSGDSGPAQHRAFNGSGLEGTYKRSHRRAXNRAGDNEXVHNESGPRARAGG 507
G G G + +++GSG G+Y S + + +G + SG +R+GG
Sbjct: 70 GGGGGGGSGSGSYSGSG-SGSYSGSGSGSGSGSGSGSWSGSSSGSSSRSGG 119
>07_03_0619 +
20009837-20010331,20010437-20010875,20010974-20011161,
20011315-20011620
Length = 475
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 227 KFTTGAGSDHMIRRVLRAIRDENRASVDQFQSGEGVGESLQGLXLATPARHSI 385
KF G + IR+VLR I E A++ Q S L L + HS+
Sbjct: 216 KFNKGLSASRRIRKVLRQIAREREAALQQGHSSSADDFFTYMLVLRSEGTHSL 268
>03_02_0941 - 12589537-12590109,12590196-12590390,12590521-12590718
Length = 321
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 536 ALAPNVSSTCPPARARGPDSLWTXSLSPARFXA 438
+LA ++ TCP G D+L +PARF A
Sbjct: 213 SLAASLGGTCPRTAGAGDDNLAPLDPTPARFDA 245
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = -2
Query: 139 VSVASAICSEPDNLLFLMSATNLPTVSMCFS 47
+S+ +++C++P N +F++S + T+S F+
Sbjct: 616 ISILTSLCNDPKNCVFIVSGRDRTTLSEWFA 646
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -1
Query: 539 RALAPNVSSTCPPARARGPDSLWTXSLSPARFXALRCDLL*VPSSPDPLKARCCAGPESP 360
RA +PN + + P A PD + P R +L PS+P P A P SP
Sbjct: 143 RAASPNYTPSTPQRHAASPDYTPSTPTPPRRAASLDY----TPSTPPPRAASPDYTPLSP 198
Query: 359 XP 354
P
Sbjct: 199 PP 200
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -1
Query: 569 ILGRPQDRSTRALAPNVSSTCPPARARGPDSLWTXSLSPARFXALRCDLL*VPSSPDPLK 390
++G P+ RA +P+ + + PP RA PD + +P R A D PS+P P +
Sbjct: 61 VMGSPR----RAASPDYTPSTPPRRAASPDYTPSTPTTPRR--AASPDY--TPSTPTPPR 112
Query: 389 ARCCAG--PESPXP 354
P +P P
Sbjct: 113 RAASPDYTPSTPPP 126
>09_02_0258 -
6380702-6380758,6380767-6380794,6381352-6381467,
6382318-6382435,6382542-6382721,6383214-6383313,
6384315-6384618
Length = 300
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 280 GS*NSPNHVIATSSSGKL-ELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSEP 107
G + P H++ S+S L AAA R P ++ A A + ST+V +A +EP
Sbjct: 10 GRASPPPHLLLLSNSSLAPSLPTVAAACRMPPAAAAAARSVSVSVSTAVDAPTAAAAEP 68
>08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991
Length = 1165
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = -2
Query: 601 VPSATTTLQFLFWVGLRTARPERWPRT*VAPVRPHVLAGLTRYGRPHCLQLGSXLCDVIS 422
+P A TT V R PE P P R H+ A LT YGR L+ L D +
Sbjct: 6 LPRAPTTAALAAGVPHRFPAPEGEPPPPRGPNRAHLNALLTSYGRRGRLRDAQLLFDQMP 65
Query: 421 YR 416
R
Sbjct: 66 SR 67
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 560 RPQDRSTRALAPNVSSTCPPARARGPDS 477
R + R T+A P ++ PPA ARGP +
Sbjct: 62 RRRSRGTQARRPPAAARRPPAMARGPQA 89
>04_04_1427 +
33491847-33491888,33493504-33493623,33493740-33493976,
33494754-33495638,33495733-33495837,33495920-33496064,
33496146-33496310,33496391-33496629,33496724-33496756,
33496840-33496921,33497017-33497177,33497282-33497455,
33497549-33497731,33497832-33498019,33498155-33498251
Length = 951
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 230 FTTGAGSDHMIRRVLRAIRDENRASVDQFQSG 325
FT G DH++ RA R EN+ ++D G
Sbjct: 349 FTKGVDKDHVLLLAARASRTENQDAIDAAMVG 380
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.9 bits (59), Expect = 7.4
Identities = 29/85 (34%), Positives = 35/85 (41%)
Frame = -1
Query: 614 SPTSSPFRDDDLAVPILGRPQDRSTRALAPNVSSTCPPARARGPDSLWTXSLSPARFXAL 435
SP SP A P+ RA +P+ S PP RA PD +T + SP+R A
Sbjct: 89 SPDYSPASPPRRAASPDYTPESPPRRAASPDYSPESPPRRAASPD--YTPA-SPSR-RAA 144
Query: 434 RCDLL*VPSSPDPLKARCCAGPESP 360
D P SP A P SP
Sbjct: 145 SPDY--TPESPPRRAASPDYTPASP 167
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 557 PQDRSTRALAPNVSSTCPPARARGPDSLWTXSLSPAR 447
P+ RA +P+ S PP RA PD +T P R
Sbjct: 80 PESPPRRAASPDYSPASPPRRAASPD--YTPESPPRR 114
>03_01_0564 - 4176177-4178096
Length = 639
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 339 SPTPS-PLWNWSTEALFSSLMALKTLLIM*SLPAPV 235
SP S PLW WS E + +S ++ L + LP +
Sbjct: 358 SPDSSRPLWGWSDEEVDNSTVSFSKLFLFLELPLTI 393
>02_05_1035 +
33659965-33660155,33660992-33661066,33661634-33661670,
33662415-33662487,33662635-33662801
Length = 180
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 352 SGSGDSGPAQHRAFNGSGLEGTYKRSHRR 438
S SG GP R F+ +G YK+S R
Sbjct: 33 SASGSPGPTLQRHFSNDDGQGKYKKSQHR 61
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 640 QPPAPWRDSRRRPVPSATTTLQFLFWVGLRTAR-PERWPRT*VAPVRPHVLAGLTRYGRP 464
Q P P + + P+ +ATT Q +F + T + P R A +PH A + + P
Sbjct: 116 QAPTPGFGTNQAPIQAATTWSQPIFDPSMATQQVPPIGARQSNAMAQPHAQAAILPFATP 175
Query: 463 H 461
+
Sbjct: 176 Y 176
>10_02_0178 + 6241231-6241292,6245238-6245505
Length = 109
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +1
Query: 337 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAXNRAGDNEXVHNESGPRARA 501
RE G Q++ F+ L Y R+ ++ N+A DN+ H +A
Sbjct: 11 RERGAMGGEQRRSPQNKNFDDDPLAEEYSRNDDKSSNKANDNDGGHRSPEDHVKA 65
>07_03_0621 +
20025998-20026492,20026598-20027036,20027135-20027322,
20027476-20027664
Length = 436
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 227 KFTTGAGSDHMIRRVLRAIRDENRASVDQFQSGEGVGESLQGLXLATPARHSI 385
KF G + IR+VLR I E A++ Q S L L + HS+
Sbjct: 216 KFIKGLRASRRIRKVLRQIAREREAALQQGHSSSADDFFTYMLVLRSEGTHSL 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,909,531
Number of Sequences: 37544
Number of extensions: 458182
Number of successful extensions: 1795
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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