Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0024
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 31 0.71
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 30 1.6
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 30 1.6
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 30 1.6
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 29 2.2
U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily ass... 29 2.2
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 28 5.0
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 5.0
U41017-4|AAC48214.1| 278|Caenorhabditis elegans C.elegans homeo... 28 5.0
AL032657-8|CAB63370.1| 389|Caenorhabditis elegans Hypothetical ... 28 5.0
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 6.6
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 28 6.6
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 377 HSIVPSTDQDLREPIRDHIAELRTELETMRXSITS 481
H ++ +DLRE +R+H+ EL + ET+ ++ S
Sbjct: 198 HVLIEKEVEDLREKVREHLGELSKQSETIGNALHS 232
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 431 IAELRTELETMRXSITSQAREHVRADRCYSR 523
I ELR E+ET+R IT +EH + R
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEELRER 426
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 431 IAELRTELETMRXSITSQAREHVRADRCYSR 523
I ELR E+ET+R IT +EH + R
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEELRER 426
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 431 IAELRTELETMRXSITSQAREHVRADRCYSR 523
I ELR E+ET+R IT +EH + R
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEELRER 426
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +1
Query: 349 RSGSGDSGPAQHRAFN--GSGLEGTYKRSHRRAXNRAGDNEXVHNES-GPRARAGGQ 510
R GDSG + R G + +RSH R G E H E GP+ G Q
Sbjct: 325 RPARGDSGEVEKRGRGEKAEGRDEQERRSHGSEERRGGSEEQPHREERGPQKPEGQQ 381
>U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily
assigned gene nameprotein 127 protein.
Length = 862
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = -2
Query: 208 AARRTPQSSRAVALDSLIIFSTSVSVASAICSEPDNLLFLMSATNLPTVSMCFSLNSISK 29
+++R Q+S A +LDS ++ +S AS+ ++P +++ T+S+ S +SI
Sbjct: 729 SSKRNSQASNAASLDSFGSSTSGISTASSNNNDPSMETLTSKLSHISTISINDSPSSI-- 786
Query: 28 DSKXAL 11
DS+ L
Sbjct: 787 DSQGTL 792
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 39 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEK 152
++ EK I+T+G VAD + SE + + TLVEK
Sbjct: 736 QIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEK 773
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 39 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEK 152
++ EK I+T+G VAD + SE + + TLVEK
Sbjct: 736 QIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEK 773
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 39 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEK 152
++ EK I+T+G VAD + SE + + TLVEK
Sbjct: 736 QIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEK 773
>U41017-4|AAC48214.1| 278|Caenorhabditis elegans C.elegans homeobox
protein 41 protein.
Length = 278
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 274 KSHQG*KQSFRRPVPEW*GCRRESPRSGSG--DSGPAQHRAFNGSGLEGTYKRSHRRAXN 447
KS + ++S +P + R++ P +G D PA+ + S +EG+ +RS R+ +
Sbjct: 110 KSEEEGEKSDAQPSNQGNPSRQKQPPTGKRKRDDLPAREHSETFSNVEGSSERSTTRSQS 169
Query: 448 RAGDNEXVHNESGPRARAGGQVLL 519
R +E N + R +L+
Sbjct: 170 RVSLDEDRQNSAPVRRSVEAHILV 193
>AL032657-8|CAB63370.1| 389|Caenorhabditis elegans Hypothetical
protein Y47H9C.8 protein.
Length = 389
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 12 RAXLESXDIELS--EKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESN 170
R+ +E +++L E ++E VG+ +AD K E++ E TL + + + +N
Sbjct: 38 RSPIEDLELQLEQPEINVEEVGRIIADGIIEKTLDDEKLKELTLKFAKNVPTMAN 92
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 ELSEKHI---ETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVLRAA 209
E+SEK E G AD + ++Q+ A+LT + +++ + + ELC +
Sbjct: 111 EVSEKEDGSEEEAGTSGADEEGKQYKNTDQLVGASLTCIFEVLEQLSRRDAELCVQALES 170
Query: 210 ARRISSSLPLE 242
+ S+P++
Sbjct: 171 LLSLIQSMPID 181
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 ELSEKHI---ETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVLRAA 209
E+SEK E G AD + ++Q+ A+LT + +++ + + ELC +
Sbjct: 111 EVSEKEDGSEEEAGTSGADEEGKQYKNTDQLVGASLTCIFEVLEQLSRRDAELCVQALES 170
Query: 210 ARRISSSLPLE 242
+ S+P++
Sbjct: 171 LLSLIQSMPID 181
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 337 RESPRSGSGDSGPAQHRAFNGSGLEGTY 420
R +PR G GP +R G G G+Y
Sbjct: 325 RNNPRGPGGPGGPGGYRGGRGGGRGGSY 352
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 337 RESPRSGSGDSGPAQHRAFNGSGLEGTY 420
R +PR G GP +R G G G+Y
Sbjct: 328 RNNPRGPGGPGGPGGYRGGRGGGRGGSY 355
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 337 RESPRSGSGDSGPAQHRAFNGSGLEGTY 420
R +PR G GP +R G G G+Y
Sbjct: 325 RNNPRGPGGPGGPGGYRGGRGGGRGGSY 352
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 337 RESPRSGSGDSGPAQHRAFNGSGLEGTY 420
R +PR G GP +R G G G+Y
Sbjct: 328 RNNPRGPGGPGGPGGYRGGRGGGRGGSY 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,615
Number of Sequences: 27780
Number of extensions: 308665
Number of successful extensions: 930
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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