Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0024
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.8  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 505 RPHV--LAGLTRYGRPHCLQLGSXLCDVISY 419
           +PH+  L GL   GRP  LQL S    +I Y
Sbjct: 312 QPHLRGLNGLEFAGRPQNLQLQSQRNQLIQY 342


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 484 LTRYGRPHCLQ 452
           + RYG+PHC +
Sbjct: 588 VVRYGKPHCAE 598


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 484 LTRYGRPHCLQ 452
           + RYG+PHC +
Sbjct: 626 VVRYGKPHCAE 636


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 233  TTGAGSDHMIRRVLRAIRDENRASVDQF 316
            T G  +D  +   + ++RDENR   D F
Sbjct: 1091 THGEMTDKQVEAYMLSLRDENRYHEDIF 1118


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 314 FQSGEGVGESLQGL 355
           F+ G+G+G+ LQG+
Sbjct: 171 FEPGKGLGKQLQGI 184


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 324 PLWNWSTEALFSSL 283
           P WNWS + +  S+
Sbjct: 838 PYWNWSNQDVIKSI 851


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 537 SGRAVLRPTQNRNCKVVVAEGTG 605
           SG +VLR T+  N   ++AE  G
Sbjct: 441 SGGSVLRATKEYNTVPIIAESYG 463


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 537 SGRAVLRPTQNRNCKVVVAEGTG 605
           SG +VLR T+  N   ++AE  G
Sbjct: 441 SGGSVLRATKEYNTVPIIAESYG 463


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 537 SGRAVLRPTQNRNCKVVVAEGTG 605
           SG +VLR T+  N   ++AE  G
Sbjct: 441 SGGSVLRATKEYNTVPIIAESYG 463


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 395 TDQDLREPIRDHIAELRTELETMRXSITSQAREHVRADRCYSRSGPALW 541
           +D+DLRE I +    +R + E  R  +       V+ D C      A++
Sbjct: 313 SDEDLREAIDEFKTPMRNDSERNRSPVRPAT---VQYDTCCQGRATAIY 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,720
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)