Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0023
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2105| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_22930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_2105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 485 PEPQASRNIRLRCKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFK 309
           P PQ+++  ++RCK  Y   ++D  +  +    + A    EVFK     V +   G+ K
Sbjct: 252 PTPQSTKEWKIRCKDVYIGAVEDSRRNTLEPTLQAASLSTEVFKKLSQVVQQYDNGKLK 310


>SB_22930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 314 FKELQFFTGESMD--CDGMVAMWNIETLMVRK 225
           +K LQ  T E++D   DG + +WN  T  +RK
Sbjct: 48  YKSLQLATVETVDHNVDGFIEVWNFTTGKIRK 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,949,882
Number of Sequences: 59808
Number of extensions: 383831
Number of successful extensions: 912
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)