Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0023
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 58 7e-09
AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 29 2.2
Z81549-2|CAB04473.1| 167|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 3.9
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 3.9
Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 57.6 bits (133), Expect = 7e-09
Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Frame = -1
Query: 660 DEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGTD 514
DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAEE D+G+D
Sbjct: 11 DELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSD 61
Score = 35.5 bits (78), Expect = 0.034
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 255 VEYRDFDGTQIPIMMFFKHGLEEEK 181
+EYRD DGT++P +M K + EEK
Sbjct: 156 IEYRDVDGTEVPTLMLVKEAIIEEK 180
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -2
Query: 437 YTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTNMNKVMKDILG--RFKELQFFTGE 285
+ Y+K +MK ++ +E+ D+ V+ FK + + +L RFK L FF GE
Sbjct: 88 FKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGE 142
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -3
Query: 508 VESGVDIVLNHRLVE 464
VE G+DIVLNH+LVE
Sbjct: 64 VERGIDIVLNHKLVE 78
>AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical
protein F52F10.2 protein.
Length = 508
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 339 FVHVCFKYFNLVRRLLFQFCY*FFHI 416
F+++C +Y RR L FCY F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162
>Z81549-2|CAB04473.1| 167|Caenorhabditis elegans Hypothetical
protein F55C9.3 protein.
Length = 167
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 202 FEKHHDWYLRTIKVSIFHMATMPSQSIDSPVKN*SSLNLPRMSFITLFMFVLNT 363
F + ++ LR K+ +FH T +Q+ SPV+ LN + SF+T F NT
Sbjct: 93 FRRRYNVELRHPKLRLFHF-TNETQA-KSPVETPFFLNHKKSSFLTFFNCFFNT 144
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 446 KKSYTLYLKDYMKKLVAKLEEK 381
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 446 KKSYTLYLKDYMKKLVAKLEEK 381
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 446 KKSYTLYLKDYMKKLVAKLEEK 381
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 492 STPLSTPSPCPRQPLQPKD*NPRSGYHPVLSSPT 593
+TPLS+P+P + P PR P S+P+
Sbjct: 783 ATPLSSPAPSNQSPPSQPQPGPRGSSPPAPSAPS 816
>Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 492 STPLSTPSPCPRQPLQPKD*NPRSGYHPVLSSPT 593
+TPLS+P+P + P PR P S+P+
Sbjct: 783 ATPLSSPAPSNQSPPSQPQPGPRGSSPPAPSAPS 816
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 446 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 306
KK+ L L +K + K+EEKA K+ ++K +KD L R K+
Sbjct: 23 KKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,735
Number of Sequences: 27780
Number of extensions: 304251
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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