Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0023
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05540.1 68416.m00607 translationally controlled tumor family...    46   2e-05
At3g16640.1 68416.m02127 translationally controlled tumor family...    44   7e-05
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    33   0.22 
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.68 
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar...    30   1.6  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    28   4.8  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    28   6.4  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   8.4  

>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/57 (35%), Positives = 36/57 (63%)
 Frame = -2

Query: 446 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMD 276
           KK + +++K Y+K+L  KL+    +  E+FK ++    K ++ + K+ QFF GESM+
Sbjct: 71  KKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMSKLKDFQFFVGESME 124


>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/59 (42%), Positives = 32/59 (54%)
 Frame = -2

Query: 446 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 270
           KK +  Y+K Y+K L  KL E+  DQ  VFK  +    K +L R  + QFF GE M  D
Sbjct: 84  KKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDD 139


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -1

Query: 663 GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDS 511
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+G  S
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGS 287


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 419 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 276
           D M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
           to  M protein, serotype 5 precursor (SP:P02977)
           {Streptococcus pyogenes} and to Myosin heavy chain,
           non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
           {Drosophila melanogaster}
          Length = 537

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -2

Query: 458 RLRCKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMK-DILGRFKELQFFT 291
           +L C+++    LK+ + KL AKL E+  +++ + K  M K+ K +I  + KE +  +
Sbjct: 445 KLECREAQESLLKEKLSKLEAKLAEEGTEKLSLSKA-MRKIKKLEINVKEKEFELLS 500


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 492 STPLSTPSPCPRQPLQPKD*NPRSGYH---PVLSSP 590
           +TP+  PSP P  P+Q     P +  H   PVL++P
Sbjct: 444 TTPVQKPSPVPTTPVQKPSPVPTTPVHEPSPVLATP 479


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 378 RLLFQFCY*FFHIVFEVQCVGFLAPKAYVS 467
           RLLF FC+ FF I+F       L P   ++
Sbjct: 2   RLLFSFCFFFFMIIFTATAYDPLDPSGNIT 31


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 347 MNKVMKDILGRFKELQFFTGE---SMDCDGM 264
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,306
Number of Sequences: 28952
Number of extensions: 279516
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)