Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0022
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.41 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.0  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 256 KMAQVYPHPAPEGCTSASSESAPSDQPIYPDTG 354
           ++  VYP+     C   + E++ SD P +P  G
Sbjct: 187 QLMDVYPNNDGTKCLVVTDEASISDAPFFPHRG 219


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 271 YPHP--APEGCTSASSESAPSDQPIYPDTG 354
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 172 YPYPILSPEMSQVAASWHTPSMYPLSPGAG 201


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 271 YPHP--APEGCTSASSESAPSDQPIYPDTG 354
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 64  YPYPILSPEMSQVAASWHTPSMYPLSPGAG 93


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 223 AFSQLVT-CPDFKMAQVYPHPAPEGCTS 303
           AF+ + T  P   M ++YP P P   TS
Sbjct: 306 AFNSVATPTPTSVMTELYPSPVPGHSTS 333


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 257 LKSGQVTSWLNALTNSKVLWPLLE 186
           LK G   + + A  +S V+WPL+E
Sbjct: 215 LKMGLDIASITAQASSFVVWPLVE 238


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 257 LKSGQVTSWLNALTNSKVLWPLLE 186
           LK G   + + A  +S V+WPL+E
Sbjct: 215 LKMGLDIASITAQASSFVVWPLVE 238


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = +1

Query: 232  QLVTCPD--FKMAQVYPHPAPEGC-TSASSESAPSDQPIYPD 348
            QL  CP+  F        P    C   ASS  APS  P+ PD
Sbjct: 2261 QLQVCPNGLFWNKDHCDWPENTECHPDASSTMAPSTTPMVPD 2302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,423
Number of Sequences: 336
Number of extensions: 2537
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)