Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0022
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 77 2e-15
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 26 4.1
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.4
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 26 5.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.1
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.1
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 7.1
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.4
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 77.4 bits (182), Expect = 2e-15
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 409
L + ++WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 46 LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101
Score = 70.1 bits (164), Expect = 3e-13
Identities = 51/151 (33%), Positives = 68/151 (45%), Gaps = 4/151 (2%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLR----STNLP 344
NPLF RP++F IGQ IQP RDLSRF P RR ++ K P L
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 345 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTK 524
++ + +++ T +S K+ + N V
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS--KKPYNVKYGLNHVVA 141
Query: 525 LVEKKKAQLVVIAHDVDPIELVLFLPRYAVK 617
L+E KKA+LV+IA DVDPIELV+FLP K
Sbjct: 142 LIEAKKAKLVLIASDVDPIELVVFLPALCKK 172
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 602 ALCRKMGVPYCIVKGQ 649
ALC+KMGVPY IVK +
Sbjct: 168 ALCKKMGVPYAIVKNK 183
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 229 SQLVTCPDFKMAQVYPHPAPEGCTSASSESAPS 327
++L+ PD+ + Y +P G +SA APS
Sbjct: 120 AELLNAPDYYASSPYGGYSPSGASSARQTPAPS 152
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 290 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 391
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = -3
Query: 329 SEGALSDDAEVQPSG------AGCGYTWAILKSGQVTSWLNALTNSKVLWPLLEERIHDL 168
S+ L D PSG AG G+ AI +GQ+ + N ++ KV+ PL+ I
Sbjct: 147 SDKVLQDGFRSFPSGHTSFSFAGLGFL-AIFLAGQLKMFRNKTSSWKVVVPLVPLSIASW 205
Query: 167 LGLN 156
+GL+
Sbjct: 206 IGLS 209
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 274 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 363
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 472 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 302
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 538 FFSTSLVTVFCRIGWCWASLVRLIFLGNLSFSSFP 434
FF +T+FC + +A V ++ + +++ S FP
Sbjct: 280 FFEHHFLTIFCLNAFIFAYSVGVVIVSHITESPFP 314
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 362 TAKGLFKILEKYR 400
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,442
Number of Sequences: 5004
Number of extensions: 40371
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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