Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0022
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 80 2e-15
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 80 2e-15
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 63 2e-10
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.79
08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204 28 5.6
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 28 5.6
05_05_0087 - 22291732-22292029,22292967-22293034,22293640-222937... 28 7.4
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 7.4
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/55 (61%), Positives = 45/55 (81%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 406
L + ++WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 70.5 bits (165), Expect = 1e-12
Identities = 53/160 (33%), Positives = 68/160 (42%), Gaps = 3/160 (1%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 356
NPLFEKRPK F IG + P +DL RF P + +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTR--- 78
Query: 357 RLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQ---NTVTKL 527
L + ++ T EA+ + + N VT L
Sbjct: 79 TLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYL 138
Query: 528 VEKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
+E+ KAQLVVIAHDVDPIELV++LP K + KG
Sbjct: 139 IEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKG 178
Score = 35.1 bits (77), Expect = 0.048
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 602 ALCRKMGVPYCIVKGQ 649
ALCRKM VPYCIVKG+
Sbjct: 164 ALCRKMEVPYCIVKGK 179
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/55 (61%), Positives = 45/55 (81%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 406
L + ++WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 69.3 bits (162), Expect = 2e-12
Identities = 50/145 (34%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 356
NPLFEKRPK F IG + P +DL RF P + +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTR--- 62
Query: 357 RLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQ---NTVTKL 527
L + ++ T EA+ + + N VT L
Sbjct: 63 TLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYL 122
Query: 528 VEKKKAQLVVIAHDVDPIELVLFLP 602
+E+ KAQLVVIAHDVDPIELV++LP
Sbjct: 123 IEQSKAQLVVIAHDVDPIELVVWLP 147
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/55 (50%), Positives = 41/55 (74%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 406
L + +RWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 516 VTKLVEKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
VT L+E+ KAQLVVIAHDVDPIELV++LP K + KG
Sbjct: 120 VTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG 163
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF 254
NPLFEKRPK F IG + P +DL RF
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRF 48
Score = 34.7 bits (76), Expect = 0.064
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 602 ALCRKMGVPYCIVKGQ 649
ALCRKM +PYCIVKG+
Sbjct: 149 ALCRKMEIPYCIVKGK 164
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 274 PHPAPEGCTSASSESAPSDQP 336
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
Length = 449
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 293 PSGAGCGYTWAILKSGQVTSWLNALTNSKVL-WPLLEERIHDLLGL 159
P+G+ C ++ GQ T W+N +++ + L +ER+ + L
Sbjct: 205 PAGSSCWLPAGVVSDGQATYWINHGGGDRLMSFDLTDERVATITSL 250
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 287 GAGCGYTWAILKSGQVTSWLNA 222
G GCG+ AI +SG++ +W +A
Sbjct: 83 GGGCGFAMAISESGKLLTWGSA 104
>05_05_0087 -
22291732-22292029,22292967-22293034,22293640-22293723,
22295967-22296010,22296210-22296300,22296452-22296634,
22297594-22297637,22298122-22298355,22298452-22298712,
22298790-22298915,22298993-22299077,22299171-22299244,
22299988-22300186
Length = 596
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 320 ALSDDAEVQPSGAGCGYTWAILKSGQVTSW 231
A + DA +G GCG+ A+ + G++ +W
Sbjct: 45 AAAGDAWRDVAGGGCGFAMAVSEQGKLFTW 74
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 222 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 130
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,669
Number of Sequences: 37544
Number of extensions: 302444
Number of successful extensions: 999
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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