Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0022
(649 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 110 1e-24
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 110 1e-24
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 110 1e-24
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 110 1e-24
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 110 1e-24
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 110 bits (265), Expect = 1e-24
Identities = 66/139 (47%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 421
L + +RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESALAK 115
Query: 422 XXXXXXXXXXXXXXXDEPHQRGPTPSDPAKHSHQAGREEEGA---ACGHRS*C*SY*AGS 592
D ++ P+ ++ E++ A H
Sbjct: 116 NVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLEL-VLF 174
Query: 593 LPAALCRKMGVPYCIVKGQ 649
LP ALCRKMGVPYCIVKG+
Sbjct: 175 LP-ALCRKMGVPYCIVKGK 192
Score = 86.2 bits (204), Expect = 3e-17
Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 356
N LFEKRPKNF IGQ +QP RDLSRF P ++ K P +
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 357 RLQ-LRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLVE 533
+ ++ F + + K+ + NTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 534 KKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
+KKAQLVVIAHDVDP+ELVLFLP K + KG
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKG 191
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 110 bits (265), Expect = 1e-24
Identities = 66/139 (47%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 421
L + +RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 422 XXXXXXXXXXXXXXXDEPHQRGPTPSDPAKHSHQAGREEEGA---ACGHRS*C*SY*AGS 592
D ++ P+ ++ E++ A H
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLEL-VLF 174
Query: 593 LPAALCRKMGVPYCIVKGQ 649
LP ALCRKMGVPYCIVKG+
Sbjct: 175 LP-ALCRKMGVPYCIVKGK 192
Score = 86.2 bits (204), Expect = 3e-17
Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 356
N LFEKRPKNF IGQ +QP RDLSRF P ++ K P +
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 357 RLQ-LRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLVE 533
+ ++ F + + K+ + NTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 534 KKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
+KKAQLVVIAHDVDP+ELVLFLP K + KG
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKG 191
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 110 bits (265), Expect = 1e-24
Identities = 66/139 (47%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 421
L + +RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 422 XXXXXXXXXXXXXXXDEPHQRGPTPSDPAKHSHQAGREEEGA---ACGHRS*C*SY*AGS 592
D ++ P+ ++ E++ A H
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLEL-VLF 174
Query: 593 LPAALCRKMGVPYCIVKGQ 649
LP ALCRKMGVPYCIVKG+
Sbjct: 175 LP-ALCRKMGVPYCIVKGK 192
Score = 86.2 bits (204), Expect = 3e-17
Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 356
N LFEKRPKNF IGQ +QP RDLSRF P ++ K P +
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 357 RLQ-LRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLVE 533
+ ++ F + + K+ + NTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 534 KKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
+KKAQLVVIAHDVDP+ELVLFLP K + KG
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKG 191
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 110 bits (265), Expect = 1e-24
Identities = 66/139 (47%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 421
L + +RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 422 XXXXXXXXXXXXXXXDEPHQRGPTPSDPAKHSHQAGREEEGA---ACGHRS*C*SY*AGS 592
D ++ P+ ++ E++ A H
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLEL-VLF 174
Query: 593 LPAALCRKMGVPYCIVKGQ 649
LP ALCRKMGVPYCIVKG+
Sbjct: 175 LP-ALCRKMGVPYCIVKGK 192
Score = 86.2 bits (204), Expect = 3e-17
Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 356
N LFEKRPKNF IGQ +QP RDLSRF P ++ K P +
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 357 RLQ-LRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLVE 533
+ ++ F + + K+ + NTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 534 KKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
+KKAQLVVIAHDVDP+ELVLFLP K + KG
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKG 191
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 110 bits (265), Expect = 1e-24
Identities = 66/139 (47%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 421
L + +RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 422 XXXXXXXXXXXXXXXDEPHQRGPTPSDPAKHSHQAGREEEGA---ACGHRS*C*SY*AGS 592
D ++ P+ ++ E++ A H
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLEL-VLF 174
Query: 593 LPAALCRKMGVPYCIVKGQ 649
LP ALCRKMGVPYCIVKG+
Sbjct: 175 LP-ALCRKMGVPYCIVKGK 192
Score = 86.2 bits (204), Expect = 3e-17
Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 356
N LFEKRPKNF IGQ +QP RDLSRF P ++ K P +
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 357 RLQ-LRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLVE 533
+ ++ F + + K+ + NTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 534 KKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
+KKAQLVVIAHDVDP+ELVLFLP K + KG
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKG 191
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,056,982
Number of Sequences: 53049
Number of extensions: 474783
Number of successful extensions: 1534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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