Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0022
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 81 7e-16
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 81 7e-16
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 81 9e-16
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 60 1e-09
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 40 0.002
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 27 8.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 81.0 bits (191), Expect = 7e-16
Identities = 33/56 (58%), Positives = 45/56 (80%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 409
+ + ++WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 71.3 bits (167), Expect = 5e-13
Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 356
NPLFEKR +NF IGQ IQP +D++RF P + K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 357 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLVE 533
R AF + +TK NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 534 KKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
++AQLV+IAHDV+P+E+VL LP K+ A+ KG
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 187
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 602 ALCRKMGVPYCIVKGQ 649
ALCRK VPY I+KG+
Sbjct: 173 ALCRKYNVPYAIIKGK 188
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 81.0 bits (191), Expect = 7e-16
Identities = 33/56 (58%), Positives = 45/56 (80%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 409
+ + ++WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +3
Query: 510 NTVTKLVEKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
NT+T+LVE ++AQLV+IAHDV+P+E+VL LP K+ A+ KG
Sbjct: 122 NTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG 167
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF 254
NPLFEKR +NF IGQ IQP +D++RF
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRF 55
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 602 ALCRKMGVPYCIVKGQ 649
ALCRK VPY I+KG+
Sbjct: 153 ALCRKYNVPYAIIKGK 168
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 80.6 bits (190), Expect = 9e-16
Identities = 33/56 (58%), Positives = 45/56 (80%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 409
+ + ++WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF 254
NPLFEKR +NF IGQ IQP +D++RF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRF 158
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 355
+ + ++WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF 254
NPLFEKR +NF IGQ IQP +D++RF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRF 158
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Frame = -1
Query: 508 CRIGWCWASL-VRLIFLGNL-SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCL 344
C +G C A L + + + N SF SFP QP+ C +++P F+ N+EKA + C ++Q
Sbjct: 142 CFLGLCMAILQLSIAAVANYYSFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIG 201
Query: 343 GKLV 332
G+++
Sbjct: 202 GRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 324 LRSTNLPRHWTRLQLRA 374
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 247 PDFKMAQVYPHPAPE--GCTSASSESAPSDQPIYP 345
P Q YP P P+ GCT + + P QP P
Sbjct: 155 PPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 247 PDFKMAQVYPHPAPE--GCTSASSESAPSDQPIYP 345
P Q YP P P+ GCT + + P QP P
Sbjct: 155 PPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 247 PDFKMAQVYPHPAPE--GCTSASSESAPSDQPIYP 345
P Q YP P P+ GCT + + P QP P
Sbjct: 155 PPQPQQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,026,927
Number of Sequences: 27780
Number of extensions: 232976
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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