Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0011
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.9  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   9.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.1  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 201 RVLLLVSTANTIQKSRRTIVTLKNLTPSPFIKCYLD 308
           + L  +  AN   K    I+   NL+  P+I  YLD
Sbjct: 435 KALKRLERANNGVKIPLVIIWSSNLSKRPYIYKYLD 470


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +1

Query: 208 CFWYLPQ 228
           CFWY+P+
Sbjct: 460 CFWYVPK 466


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 TIQKSRRTIVTLKNLTPSPF 290
           T+Q S  T  TLKN   SP+
Sbjct: 249 TVQLSTCTRTTLKNNRASPY 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,146
Number of Sequences: 336
Number of extensions: 3425
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)