Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0011
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   2.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   2.4  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    27   2.4  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   4.2  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   7.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   9.8  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   9.8  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 67  PFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNIT-GQNNVGTKEFCFWYLPQIQYKN 243
           PF+  RAP R+T +YL   K V KD      +A   T    +    +F    L Q  +++
Sbjct: 4   PFLTFRAPTRKTGDYL-VSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSFQS 62


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 234 IQKSRRTIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTV 383
           +QKS   ++ LK +T   FI+      R  L  V    +  +L HLL+ +
Sbjct: 735 LQKSPNNVILLKLVTSEIFIRSIKHVFRNFLAVVPQVLRSHLLSHLLNNL 784


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 133 LKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQ 255
           +KD +  F+V Y+  G + V   ++C   LPQI  KNPD Q
Sbjct: 51  VKDPVDFFAV-YDGHGGDKVA--KWCGSNLPQILEKNPDFQ 88


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/74 (25%), Positives = 26/74 (35%)
 Frame = +3

Query: 300 YLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPANFGVGCDRSCM 479
           YL D   I+  VD+K +   L     T+G                 +  N  VG DRS +
Sbjct: 297 YLKDSVHIIDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMGNIDVGADRSGI 356

Query: 480 CEVFGQVPCSVLCH 521
             +        LCH
Sbjct: 357 ARLLNPDEIDKLCH 370


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 267 KNLTPSPFIKCYLDDGRKILIDVDNKSKE 353
           KN   +P I+C L+  ++ L+   N+SKE
Sbjct: 102 KNNDDAPTIRCALNCTQEFLLSFSNESKE 130


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 115 NAGKLVLKDKIKVFSVAYNI 174
           N G LV ++++K+ S+AY I
Sbjct: 252 NVGALVCENEVKMLSIAYEI 271


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/50 (20%), Positives = 27/50 (54%)
 Frame = -2

Query: 584 NGQLILFNQFDSYIFLS*ISVMAQHRAGHLPENFTHARSITSNTKICRVI 435
           +G+L+L++ FDS I +  ++    +   H+  N +   ++  + + C ++
Sbjct: 111 SGELLLWSSFDSKITVWSLNTQKGYLLPHVKTNVSKVYALHPSMQFCTIL 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,576
Number of Sequences: 5004
Number of extensions: 57232
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)