Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0011
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424...    31   1.1  
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468...    30   1.4  
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    29   4.4  
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503...    28   5.8  
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361...    28   7.7  
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572...    28   7.7  

>03_05_0744 +
           27336697-27337131,27337329-27337787,27340852-27342418,
           27342641-27343044
          Length = 954

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 210 LLVSTANTIQKSRRTIVTLKNLTPSPFIKCYLDDG 314
           ++  T+N I++  R  V L NL P P ++C   +G
Sbjct: 695 MIEGTSNVIEEQERAEVVLSNLCPPPCVECLTVNG 729


>01_06_1783 +
           39845998-39846174,39846260-39846534,39846758-39846891,
           39846992-39847116,39847312-39847494,39847610-39847644,
           39847756-39847912,39847936-39848049,39848143-39848235,
           39848316-39848455,39848606-39848676,39848759-39848839,
           39851475-39851954,39852110-39852387,39853346-39854143
          Length = 1046

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -3

Query: 286 GEGVKFFKVTIVRLDFCIVFAVDTKSRTLLFLHYFGLLCCRLLKTP*FCLSGLASRHLSS 107
           GE     ++  ++    +VF V T S  LLFL +F       L    FCLSGL   H  +
Sbjct: 246 GEEAADSEIVELQTKTALVFIV-TASLVLLFLFFFKSTWSAWLLVVLFCLSGLQGLHYVA 304

Query: 106 SMCVL 92
           S  ++
Sbjct: 305 STLIV 309


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +3

Query: 282  SPFIKCYLDDGRKILIDVDN--KSKEDILEHL 371
            S  I   LDD  KI+ID DN  ++K++++E+L
Sbjct: 1914 SAVIFSLLDDSNKIMIDFDNLKQNKDELMENL 1945


>03_06_0285 +
           32848085-32848988,32849057-32849245,32850136-32850311,
           32850569-32851141
          Length = 613

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 279 PSPFIKCYLDDGRKILIDVDNKS 347
           P+P +K YL+D +KI  + DN S
Sbjct: 394 PAPLLKAYLEDSKKIPSNSDNLS 416


>10_01_0330 +
           3614562-3614574,3614676-3615118,3617700-3617825,
           3618379-3618786,3618871-3619311,3619399-3619779
          Length = 603

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 309 DGRKILIDVDNKSKEDILEHLLHTVGKS 392
           DG++ +++VDN   E+   H LH +G +
Sbjct: 172 DGKRQIVEVDNVIDEEEYNHNLHVMGNA 199


>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
            24157361-24157445,24157525-24157666,24157762-24157894,
            24157993-24158254,24158331-24158519,24158596-24158721,
            24158809-24159195,24159288-24159398,24159629-24160423,
            24161114-24161255,24161350-24162518,24162609-24162818,
            24163010-24163478,24164037-24164464
          Length = 1637

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 207  LLLVSTANTIQKSRRTIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKE 353
            +L   T +TI   R   VT++++  +  I C  D G K ++  DN S E
Sbjct: 1125 MLSGETEDTISDGRIVQVTVRSIQDNRII-CTFDSGLKAIVMADNYSDE 1172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,393
Number of Sequences: 37544
Number of extensions: 323098
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)