Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0011
(666 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003590-1|AAH03590.1| 173|Homo sapiens mitochondrial ribosomal... 85 2e-16
AK024702-1|BAB14968.1| 173|Homo sapiens protein ( Homo sapiens ... 85 2e-16
AK024433-1|BAB15723.1| 192|Homo sapiens FLJ00023 protein protein. 85 2e-16
AB061208-1|BAB54958.1| 33|Homo sapiens mitochondrial ribosomal... 35 0.30
AB020632-1|BAA74848.1| 553|Homo sapiens KIAA0825 protein protein. 33 0.92
AK023848-1|BAB14700.1| 1867|Homo sapiens protein ( Homo sapiens ... 32 1.6
AF265555-1|AAF75772.1| 4829|Homo sapiens ubiquitin-conjugating B... 32 1.6
AB033115-1|BAA86603.2| 2793|Homo sapiens KIAA1289 protein protein. 32 1.6
>BC003590-1|AAH03590.1| 173|Homo sapiens mitochondrial ribosomal
protein S25 protein.
Length = 173
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +3
Query: 255 IVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXX 434
I+ KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+ +GK+
Sbjct: 64 IMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQL 123
Query: 435 DNPANFGVG--CDRSCMCEVFGQVPCSVL 515
+PANFG C R C+CEV GQVPC L
Sbjct: 124 SHPANFGPRKYCLRECICEVEGQVPCPSL 152
Score = 77.8 bits (183), Expect = 3e-14
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +1
Query: 64 MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 243
MP MKGR PIRRTL YL+ G +V KD +KV +V YN G+ G ++F F+ +PQIQYKN
Sbjct: 1 MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59
Query: 244 PDVQ 255
P VQ
Sbjct: 60 PWVQ 63
>AK024702-1|BAB14968.1| 173|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21049 fis, clone CAS00384. ).
Length = 173
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +3
Query: 255 IVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXX 434
I+ KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+ +GK+
Sbjct: 64 IMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQL 123
Query: 435 DNPANFGVG--CDRSCMCEVFGQVPCSVL 515
+PANFG C R C+CEV GQVPC L
Sbjct: 124 SHPANFGPRKYCLRECICEVEGQVPCPSL 152
Score = 77.8 bits (183), Expect = 3e-14
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +1
Query: 64 MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 243
MP MKGR PIRRTL YL+ G +V KD +KV +V YN G+ G ++F F+ +PQIQYKN
Sbjct: 1 MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59
Query: 244 PDVQ 255
P VQ
Sbjct: 60 PWVQ 63
>AK024433-1|BAB15723.1| 192|Homo sapiens FLJ00023 protein protein.
Length = 192
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +3
Query: 255 IVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXX 434
I+ KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+ +GK+
Sbjct: 83 IMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQL 142
Query: 435 DNPANFGVG--CDRSCMCEVFGQVPCSVL 515
+PANFG C R C+CEV GQVPC L
Sbjct: 143 SHPANFGPRKYCLRECICEVEGQVPCPSL 171
Score = 77.8 bits (183), Expect = 3e-14
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +1
Query: 64 MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 243
MP MKGR PIRRTL YL+ G +V KD +KV +V YN G+ G ++F F+ +PQIQYKN
Sbjct: 20 MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 78
Query: 244 PDVQ 255
P VQ
Sbjct: 79 PWVQ 82
>AB061208-1|BAB54958.1| 33|Homo sapiens mitochondrial ribosomal
protein S25 protein.
Length = 33
Score = 34.7 bits (76), Expect = 0.30
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 100 TLNYLNAGKLVLKDKIKVFSVAYNITGQNNVG 195
TL YL+ G +V KD +KV +V YN G+ G
Sbjct: 1 TLQYLSQGNVVFKDSVKVMTVNYNTHGELGEG 32
>AB020632-1|BAA74848.1| 553|Homo sapiens KIAA0825 protein protein.
Length = 553
Score = 33.1 bits (72), Expect = 0.92
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 510 PSRAPARKLHT---CTIYHIQHQNLQGYPFSQPLTIPNLMFLLISLQYVVNVLRYLLSIY 340
PS+AP + LHT +Y QH + P + L+ Q +N L++ ++ Y
Sbjct: 154 PSKAPLKNLHTYLSTAVYVFQHFKRYDNLMKEMTKKPIFLVLVQRYQEFINTLQFQVTNY 213
Query: 339 CLR 331
C+R
Sbjct: 214 CVR 216
>AK023848-1|BAB14700.1| 1867|Homo sapiens protein ( Homo sapiens cDNA
FLJ13786 fis, clone PLACE4000654, highly similar to Mus
musculus mRNA for ubiquitin conjugating enzyme. ).
Length = 1867
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 519 GTTPSRAPARKLHTCTIYHIQHQNLQGYPFSQPLTIPNLMFLL 391
G+T A K+ T ++H+ H+ L G P +T+ L+ LL
Sbjct: 958 GSTSGAEAANKIITVPVFHLFHKLLAGQPLPAEMTLAQLLTLL 1000
>AF265555-1|AAF75772.1| 4829|Homo sapiens ubiquitin-conjugating
BIR-domain enzyme APOLLON protein.
Length = 4829
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 519 GTTPSRAPARKLHTCTIYHIQHQNLQGYPFSQPLTIPNLMFLL 391
G+T A K+ T ++H+ H+ L G P +T+ L+ LL
Sbjct: 3920 GSTSGAEAANKIITVPVFHLFHKLLAGQPLPAEMTLAQLLTLL 3962
>AB033115-1|BAA86603.2| 2793|Homo sapiens KIAA1289 protein protein.
Length = 2793
Score = 32.3 bits (70), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 519 GTTPSRAPARKLHTCTIYHIQHQNLQGYPFSQPLTIPNLMFLL 391
G+T A K+ T ++H+ H+ L G P +T+ L+ LL
Sbjct: 1884 GSTSGAEAANKIITVPVFHLFHKLLAGQPLPAEMTLAQLLTLL 1926
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,353,566
Number of Sequences: 237096
Number of extensions: 1911332
Number of successful extensions: 3474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3471
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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