Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0011
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-16|AAF60793.1|  170|Caenorhabditis elegans Hypothetical...    68   5e-12
Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z78059-6|CAH04727.1|  362|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z78014-4|CAH04707.1|  362|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC024826-16|AAF60793.1|  170|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.1 protein.
          Length = 170

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/78 (41%), Positives = 46/78 (58%)
 Frame = +3

Query: 282 SPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPANFGVG 461
           +PF + YL+DGR++L D+D   +E+I + L  T+GK+               NPA+FG  
Sbjct: 75  TPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHLESIAKLNPADFGSK 134

Query: 462 CDRSCMCEVFGQVPCSVL 515
            +R CMCEV GQ PC+ L
Sbjct: 135 NERQCMCEVQGQHPCTGL 152



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +1

Query: 64  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAY--NITGQNNVGTKEFCFWYLPQIQY 237
           MPFM G  P+RRT  YL  GK+ L+D + VFS+ +  N T + + G ++F +W   Q+QY
Sbjct: 1   MPFMHGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQS-GARDFVYWNWAQLQY 59

Query: 238 KNPDVQ 255
            NP VQ
Sbjct: 60  HNPKVQ 65


>Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical
           protein E02H1.8 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 249 RTIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGK 389
           R    ++N   +PF    LDDG+K+    +N +  D++ +     G+
Sbjct: 69  RVKTDIRNDRRAPFFVATLDDGQKLHFSTENMTAMDVIMNFNRLTGQ 115


>Z78059-6|CAH04727.1|  362|Caenorhabditis elegans Hypothetical
           protein C34B4.3 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 613 RKQITQTCY*MAN*FYLISLILIFSSHEFR*WHNT 509
           R Q  +T Y +    YL++LIL+ S+H F+ W+ T
Sbjct: 134 RNQKRKTSYSLCALCYLVALILVLSTH-FQSWYVT 167


>Z78014-4|CAH04707.1|  362|Caenorhabditis elegans Hypothetical
           protein C34B4.3 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 613 RKQITQTCY*MAN*FYLISLILIFSSHEFR*WHNT 509
           R Q  +T Y +    YL++LIL+ S+H F+ W+ T
Sbjct: 134 RNQKRKTSYSLCALCYLVALILVLSTH-FQSWYVT 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,261,233
Number of Sequences: 27780
Number of extensions: 319101
Number of successful extensions: 751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)