Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0011
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33440.1 68414.m04139 proton-dependent oligopeptide transport...    29   2.1  
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ...    27   8.5  
At3g21140.1 68416.m02671 expressed protein                             27   8.5  
At1g51560.1 68414.m05803 expressed protein                             27   8.5  
At1g28120.1 68414.m03445 expressed protein                             27   8.5  

>At1g33440.1 68414.m04139 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 601

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +1

Query: 466 IDRACVKFSGRC---PARCCAITEIHERKI 546
           +D+AC+K  G+    P R C I ++H+ KI
Sbjct: 308 LDKACIKTQGKAMESPWRLCTIEQVHQVKI 337


>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425
          Length = 695

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +3

Query: 453 GVGCDRSCMCE----VFGQVPCSVLCHYRNS*EEN 545
           GVGC  +C CE    VFG+   S+L    +  EEN
Sbjct: 507 GVGCSMNCRCEGCTNVFGRKDGSLLVIMESKLEEN 541


>At3g21140.1 68416.m02671 expressed protein
          Length = 387

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 495 ARKLHTCTIYHIQHQNLQGYPF 430
           AR  H CT+    H   +GYPF
Sbjct: 154 ARFAHLCTVMSKMHHRREGYPF 175


>At1g51560.1 68414.m05803 expressed protein
          Length = 392

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 495 ARKLHTCTIYHIQHQNLQGYPF 430
           AR  H CT+    H   +GYPF
Sbjct: 158 ARFAHLCTVMSKMHHRREGYPF 179


>At1g28120.1 68414.m03445 expressed protein
          Length = 306

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +1

Query: 61  KMPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAY----NITGQNNVGTKEFCFWYLPQ 228
           K+P++  + P+        +G  +L +KIK+    Y       G  N   + F F YL  
Sbjct: 45  KVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQYIGIRRTRGDGNCFFRSFMFSYLEH 104

Query: 229 I 231
           I
Sbjct: 105 I 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,453
Number of Sequences: 28952
Number of extensions: 280959
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)