Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0007
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   0.53 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   6.5  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   6.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.6  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 530 YSNFNLYLFDKFCLVVVT 583
           YSNF+++LFD   +V +T
Sbjct: 70  YSNFSVFLFDIITIVTLT 87


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 162 DFKTENEPLKKYALCMLIKSQLMTKDGKFKKT 257
           D  +    LK Y  C+L K +   +  K K T
Sbjct: 30  DILSNERLLKNYVNCLLDKGRCTPEGKKLKST 61


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +3

Query: 3   FGTSMXTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKT 173
           FG ++ T++  V  ++L +  T  + + + ++  DC+ +     +   KLK G  +T
Sbjct: 10  FG-ALLTYVSSVEYLILREIDTILKNDQMTRNYLDCVLDKGKCTKEAEKLKKGITET 65


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 343 PSPNSLELCEMLPRERPEA 399
           P  N  E   + PRERP A
Sbjct: 302 PGQNPGEKTNIAPRERPRA 320


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 344 PHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHT 445
           PH+    Y +C H K  + A       P   FHT
Sbjct: 484 PHELCDKYYRCVHGKPTEFAC-----RPGTVFHT 512


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 630 LXRTQKKIKFWFSIEYVTTTKQN 562
           L  T+++IK WF    +   K+N
Sbjct: 279 LCLTERQIKIWFQNRRMKWKKEN 301


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 630 LXRTQKKIKFWFSIEYVTTTKQN 562
           L  T+++IK WF    +   K+N
Sbjct: 281 LCLTERQIKIWFQNRRMKWKKEN 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,362
Number of Sequences: 336
Number of extensions: 3162
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)