Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0007
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 26 5.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 5.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.0
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 7.0
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 9.3
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 9.3
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.3
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 274 HFSQSDVFLNFPSLVISCDLISIHRAYFFNGSFSVL 167
HFS++ + FP+L++ C + R + + S S++
Sbjct: 217 HFSEAHILEKFPNLLLHCFRGYVERMFIDSMSMSII 252
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 384 RKTRSTLFSCKH---IIQPNRSIPH*C*IARTCLSRRYHDYIGEYAILYG 524
RK RS F + IIQ C I TC+S + I EY +L+G
Sbjct: 7 RKERSVAFITEKYAAIIQKPSVKDSDCIITFTCISLEEFEKIKEYELLFG 56
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.0
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -1
Query: 315 SISFSTFNLSSALGTLARATSS*ISRPWSSAVI*SAYIEHTSSMVRFQS*-SRLSSVCSP 139
S S ST + S + SS S P SS+ S+ I SS + S S SSV S
Sbjct: 520 STSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSI 579
Query: 138 IVHQLSSRRDSRLCVSSSSPSA 73
+ SS + L +SSSS S+
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSS 601
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 3 FGTSMXTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 170
F ++ F+V V V A LTDE+K L K R + S + E+L K FK
Sbjct: 231 FLCAIVIFLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 48 VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 200
V + +TD N+ + L E + + ++K KT DFK + + YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.0
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = -1
Query: 318 ASISFSTFNLSSALGTLARATSS*ISRPWS-SAVI*SAYIEHTSSMVRFQS*SRLSSVCS 142
+S S ST + SS+ ++ ++SS S P S S+ I S+ +S + S SS S
Sbjct: 256 SSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS 315
Query: 141 PIVHQLSSRRDSRLCVSSSSPSA 73
LSS S SSSP++
Sbjct: 316 SFSSTLSSSSMSSSSSFSSSPTS 338
Score = 25.0 bits (52), Expect = 9.3
Identities = 27/82 (32%), Positives = 36/82 (43%)
Frame = -1
Query: 318 ASISFSTFNLSSALGTLARATSS*ISRPWSSAVI*SAYIEHTSSMVRFQS*SRLSSVCSP 139
+S S STF+ ++ T + SS SS+ S+ TSS + S SS S
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSS 249
Query: 138 IVHQLSSRRDSRLCVSSSSPSA 73
LSS S SSSS S+
Sbjct: 250 TSSSLSSSSSSSTASSSSSSSS 271
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 206 YADQITADDQGREIQEDVALAKVPNAEDKLKVEKLIDAC 322
Y D+ R + DV+LA++ + D K+ ++D C
Sbjct: 374 YLDENAGKLSNRMKRGDVSLAQISSGGDLKKINHVLDTC 412
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 486 YHDYIGEYAILYGVIILTLIYI 551
YH G Y YG I+ L++I
Sbjct: 475 YHSPFGIYGACYGAFIIILVFI 496
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 423 IQPNRSIPH*C*IARTCLSRRYHDY 497
+ P ++P C R C+S+ YH++
Sbjct: 26 VWPLVTVPRQCICLRWCISKEYHEF 50
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 21 TFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 188
TF++FVV ++L + L ++ K+ + + + E KL GD F+ P+
Sbjct: 277 TFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,254
Number of Sequences: 5004
Number of extensions: 54089
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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