Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0007
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)             29   4.2  
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 284 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 412
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 189 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 58
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)
          Length = 283

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +2

Query: 224 ADDQGREIQEDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHA 403
           A+ +G EI   V      +  D L+ +K++D  L ++      TA +YV+ YHE   KH+
Sbjct: 175 AEKEGSEI---VGYKTFQDMADALE-KKIVDGILIDR-----YTAGSYVRHYHENKLKHS 225

Query: 404 LFL*THNPTQPFHTSLVLNSS 466
           L   +H          V++S+
Sbjct: 226 LISASHVQISGQQIGFVISSN 246


>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = -1

Query: 342 LLPLLARQASISFSTFNLSSALGTLARATSS*ISRPWSSAVI*SAYIEHTSSMVRFQS*S 163
           L   ++RQ SIS    +  S  G+++    S ISR  S +   S+ I    SM      S
Sbjct: 505 LCSAISRQGSISSRLCSAISRQGSISSRLCSAISRQGSISSRLSSAISRRGSM------S 558

Query: 162 RLSSVCSPIVHQLSSRRDSRLCVS---SSSPSAHL*GPEP 52
             SS    I   + SR +S   V    SSSPS+ + G EP
Sbjct: 559 SRSSSDVGIQGSILSRPNSEFKVQGSISSSPSSDVGGQEP 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,878,695
Number of Sequences: 59808
Number of extensions: 391422
Number of successful extensions: 1059
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)