Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0007
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 32 0.37
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro... 31 0.49
At4g02710.1 68417.m00366 kinase interacting family protein simil... 29 3.5
At5g64710.2 68418.m08135 expressed protein contains Pfam profile... 28 4.6
At5g64710.1 68418.m08134 expressed protein contains Pfam profile... 28 4.6
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 28 4.6
At1g77270.1 68414.m08999 expressed protein 28 4.6
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 27 8.0
At2g04230.1 68415.m00410 F-box family protein contains F-box dom... 27 8.0
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 69 DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 245
D K +K+H CL+ + DE N L+T + K + P+K+ A L K KDGK
Sbjct: 77 DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132
>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
P450, Arabidopsis thaliana; supported by cDNA:
gi_15293092_gb_AY050980.1_
Length = 484
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 404 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 309
ERA+G S G +SR C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466
>At4g02710.1 68417.m00366 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1111
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 425 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 333
DYVFT +E A +S+G+ + L EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811
>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 716
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +3
Query: 45 VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 215
VV + + K+N K + + ++ ++ V +K D K + EP+K L +
Sbjct: 237 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 296
Query: 216 KSQLMTKDGKFKK 254
S KDG KK
Sbjct: 297 VSSFEEKDGFLKK 309
>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 841
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +3
Query: 45 VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 215
VV + + K+N K + + ++ ++ V +K D K + EP+K L +
Sbjct: 362 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 421
Query: 216 KSQLMTKDGKFKK 254
S KDG KK
Sbjct: 422 VSSFEEKDGFLKK 434
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 105 DCLSETKADEQLV--NKLK-TGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKTSLW 266
D L +K + +V N+LK T KT KK+ M IK LM K K KK +LW
Sbjct: 1610 DELEPSKPSDSMVVDNELKLTNRGKTVG---KKFITSMPIKRVLMIKPEKLKKGNLW 1663
>At1g77270.1 68414.m08999 expressed protein
Length = 682
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +3
Query: 90 KKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ---LMTKDGKFKKTS 260
KK + +++T ++++ D T+ K +LC + + L+ +DGK K+T+
Sbjct: 174 KKPKKSVVAKTIVWQEIIEIESATDTDTDEVGGKTLSLCGKVDASGDDLLARDGKTKRTN 233
Query: 261 LWLKCL 278
L + C+
Sbjct: 234 LQIVCV 239
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
TBP (TATA-binding protein) -interacting protein 120
(TIP120); contains TIGRFAM profile TIGR01612:
reticulocyte binding protein
Length = 1866
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 316 RLPGQQRQQPSPNSLELCEMLPRERPE 396
R P ++R++ +PN+LE LP++ E
Sbjct: 114 RAPAKEREEIAPNTLENVSKLPKQHQE 140
>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
Pfam:PF00646
Length = 448
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 278 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 385
++ KL++ KL D L + +P + WN KC E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,234,617
Number of Sequences: 28952
Number of extensions: 276210
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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