Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0006
(609 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56089 Cluster: PREDICTED: similar to CG6349-PA;... 127 2e-28
UniRef50_P26019 Cluster: DNA polymerase alpha catalytic subunit;... 118 8e-26
UniRef50_UPI0000DB7455 Cluster: PREDICTED: similar to DNA polyme... 115 8e-25
UniRef50_UPI00015B4719 Cluster: PREDICTED: similar to DNA polyme... 114 2e-24
UniRef50_Q16ZB1 Cluster: DNA polymerase; n=2; Culicidae|Rep: DNA... 113 2e-24
UniRef50_P09884 Cluster: DNA polymerase alpha catalytic subunit;... 103 3e-21
UniRef50_Q9NAH1 Cluster: DNA polymerase; n=2; Caenorhabditis|Rep... 102 8e-21
UniRef50_Q4SMZ1 Cluster: DNA polymerase; n=3; Deuterostomia|Rep:... 81 3e-18
UniRef50_Q4P5T4 Cluster: DNA polymerase; n=1; Ustilago maydis|Re... 87 4e-16
UniRef50_A7PLB6 Cluster: Chromosome chr7 scaffold_20, whole geno... 85 9e-16
UniRef50_O48653 Cluster: DNA polymerase alpha catalytic subunit;... 85 1e-15
UniRef50_Q9FHA3 Cluster: DNA polymerase alpha catalytic subunit;... 83 7e-15
UniRef50_UPI00015B62CE Cluster: PREDICTED: similar to DNA polyme... 80 4e-14
UniRef50_Q7ZA56 Cluster: DNA polymerase; n=1; Coprinopsis cinere... 80 5e-14
UniRef50_A7SAB6 Cluster: Predicted protein; n=1; Nematostella ve... 77 2e-13
UniRef50_Q55RB8 Cluster: DNA polymerase; n=2; Filobasidiella neo... 75 1e-12
UniRef50_O00874 Cluster: DNA polymerase alpha catalytic subunit;... 73 5e-12
UniRef50_Q013X2 Cluster: DNA polymerase; n=2; Ostreococcus|Rep: ... 71 2e-11
UniRef50_P28040 Cluster: DNA polymerase alpha catalytic subunit;... 71 2e-11
UniRef50_Q8I944 Cluster: DNA polymerase; n=3; Urostyla grandis|R... 69 7e-11
UniRef50_A3QME0 Cluster: DNA polymerase; n=2; Euplotes|Rep: DNA ... 66 6e-10
UniRef50_Q27152 Cluster: DNA polymerase alpha catalytic subunit;... 66 8e-10
UniRef50_Q4N0E2 Cluster: DNA polymerase alpha, putative; n=3; Th... 62 1e-08
UniRef50_Q5CU42 Cluster: DNA polymerase; n=2; Cryptosporidium|Re... 60 3e-08
UniRef50_Q5B0J8 Cluster: DNA polymerase; n=28; Eukaryota|Rep: DN... 60 4e-08
UniRef50_Q23AJ0 Cluster: DNA polymerase catalytic subunit; n=2; ... 60 5e-08
UniRef50_Q8TWJ5 Cluster: DNA polymerase; n=1; Methanopyrus kandl... 58 1e-07
UniRef50_A7AR93 Cluster: DNA polymerase alpha subunit, putative;... 58 2e-07
UniRef50_A5DZ55 Cluster: DNA polymerase; n=5; Saccharomycetales|... 58 2e-07
UniRef50_Q9Y1T1 Cluster: DNA polymerase; n=1; Toxoplasma gondii|... 57 4e-07
UniRef50_A0D7P3 Cluster: DNA polymerase; n=1; Paramecium tetraur... 57 4e-07
UniRef50_Q54SV8 Cluster: DNA polymerase; n=1; Dictyostelium disc... 55 1e-06
UniRef50_A0B8Z8 Cluster: DNA polymerase; n=1; Methanosaeta therm... 52 8e-06
UniRef50_UPI0000499846 Cluster: DNA polymerase alpha catalytic s... 51 2e-05
UniRef50_Q0W0J7 Cluster: DNA-directed DNA polymerase B; n=1; unc... 50 6e-05
UniRef50_A3QME1 Cluster: DNA polymerase; n=1; Eschaneustyla sp. ... 49 8e-05
UniRef50_Q6C675 Cluster: DNA polymerase; n=1; Yarrowia lipolytic... 48 2e-04
UniRef50_O33845 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu) [... 48 2e-04
UniRef50_Q8SRW2 Cluster: DNA polymerase; n=1; Encephalitozoon cu... 46 7e-04
UniRef50_O29753 Cluster: DNA polymerase; n=1; Archaeoglobus fulg... 46 7e-04
UniRef50_P30317 Cluster: DNA polymerase (EC 2.7.7.7) (Vent DNA p... 45 0.002
UniRef50_P52431 Cluster: DNA polymerase delta catalytic subunit;... 44 0.002
UniRef50_Q58295 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: ... 44 0.004
UniRef50_P13382 Cluster: DNA polymerase alpha catalytic subunit ... 44 0.004
UniRef50_Q308M6 Cluster: DNA polymerase; n=1; Homo sapiens|Rep: ... 43 0.005
UniRef50_P28340 Cluster: DNA polymerase delta catalytic subunit;... 43 0.005
UniRef50_A5UNA8 Cluster: DNA-directed DNA polymerase, family B, ... 42 0.009
UniRef50_P52025 Cluster: DNA polymerase; n=6; Methanococcus|Rep:... 42 0.009
UniRef50_O59610 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: ... 42 0.011
UniRef50_P90829 Cluster: DNA polymerase delta catalytic subunit;... 42 0.011
UniRef50_Q9TX75 Cluster: DNA polymerase alpha, DNAPOL alpha; n=1... 42 0.015
UniRef50_UPI0000499E46 Cluster: DNA polymerase delta catalytic s... 40 0.035
UniRef50_Q4Y991 Cluster: DNA polymerase; n=9; Plasmodium (Vincke... 39 0.081
UniRef50_A7QST5 Cluster: Chromosome chr4 scaffold_162, whole gen... 39 0.11
UniRef50_A5KAH7 Cluster: DNA polymerase; n=1; Plasmodium vivax|R... 39 0.11
UniRef50_A7EFB8 Cluster: Putative uncharacterized protein; n=1; ... 39 0.11
UniRef50_P74918 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu) [... 39 0.11
UniRef50_A2FME7 Cluster: DNA polymerase; n=1; Trichomonas vagina... 38 0.19
UniRef50_A6DKJ0 Cluster: DNA polymerase II; n=1; Lentisphaera ar... 38 0.25
UniRef50_Q9P6L6 Cluster: DNA polymerase; n=1; Schizosaccharomyce... 37 0.33
UniRef50_Q0V5M4 Cluster: DNA polymerase; n=2; Pezizomycotina|Rep... 37 0.33
UniRef50_O93745 Cluster: DNA polymerase 1; n=1; Aeropyrum pernix... 37 0.33
UniRef50_A2DY14 Cluster: DNA polymerase; n=2; Trichomonas vagina... 37 0.43
UniRef50_Q2H423 Cluster: DNA polymerase; n=6; Pezizomycotina|Rep... 36 0.57
UniRef50_Q57YY4 Cluster: DNA polymerase zeta catalytic subunit, ... 36 0.75
UniRef50_Q8SQP5 Cluster: DNA polymerase; n=1; Encephalitozoon cu... 36 0.75
UniRef50_Q27RS8 Cluster: DNA polymerase; n=36; Neurospora|Rep: D... 35 1.3
UniRef50_Q55Y13 Cluster: DNA polymerase; n=2; Filobasidiella neo... 35 1.7
UniRef50_A6R857 Cluster: DNA polymerase; n=1; Ajellomyces capsul... 35 1.7
UniRef50_Q1IJG7 Cluster: Alanyl-tRNA synthetase; n=3; cellular o... 34 3.0
UniRef50_Q22HL1 Cluster: DNA polymerase family B containing prot... 34 3.0
UniRef50_A2DDR9 Cluster: DNA polymerase; n=1; Trichomonas vagina... 34 3.0
UniRef50_A0DPB1 Cluster: Chromosome undetermined scaffold_59, wh... 34 3.0
UniRef50_Q5CWN2 Cluster: DNA polymerase; n=3; Cryptosporidium|Re... 33 4.0
UniRef50_Q7RK77 Cluster: Putative uncharacterized protein PY0302... 33 5.3
UniRef50_A2E9P0 Cluster: DNA polymerase; n=1; Trichomonas vagina... 33 5.3
UniRef50_P36056 Cluster: 37S ribosomal protein S22, mitochondria... 33 5.3
UniRef50_Q9DSV8 Cluster: DNA polymerase; n=1; Diadromus pulchell... 33 7.0
UniRef50_A2Q6K4 Cluster: FruR protein; n=6; Actinobacteridae|Rep... 33 7.0
UniRef50_Q7QQB5 Cluster: DNA polymerase; n=2; Giardia intestinal... 33 7.0
UniRef50_A0DEE6 Cluster: Chromosome undetermined scaffold_48, wh... 33 7.0
UniRef50_Q9C0H4 Cluster: B double prime 1; n=15; Eutheria|Rep: B... 33 7.0
UniRef50_Q8A3U4 Cluster: Sensor protein; n=3; Bacteroides thetai... 32 9.3
UniRef50_Q4QAV6 Cluster: ATP-dependent RNA helicase, putative; n... 32 9.3
UniRef50_P14284 Cluster: DNA polymerase zeta catalytic subunit; ... 32 9.3
>UniRef50_UPI0000D56089 Cluster: PREDICTED: similar to CG6349-PA; n=1;
Tribolium castaneum|Rep: PREDICTED: similar to CG6349-PA
- Tribolium castaneum
Length = 1406
Score = 127 bits (307), Expect = 2e-28
Identities = 59/97 (60%), Positives = 75/97 (77%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VA+R N K ++ GD VPY+IC+DGT N ATQRAYHIEELKNSE LK+D YYLA+Q+
Sbjct: 1101 VAIRYN-KQGGHYRAGDTVPYLICDDGTKNPATQRAYHIEELKNSETLKIDVTYYLANQI 1159
Query: 435 HPVISRICEPIEGMDPARVADCLGLIPPDTNKLLKEK 545
HPV+SRICEPIE +D +++DCLG+ D++ L K K
Sbjct: 1160 HPVVSRICEPIEALDLVQISDCLGV---DSSNLRKVK 1193
Score = 105 bits (252), Expect = 8e-22
Identities = 48/82 (58%), Positives = 67/82 (81%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLDIVR DWS LAAEAGKF+L+QILS+Q+ ++R +I HL++L++DL K+PLS+L
Sbjct: 1019 KGLDIVRRDWSRLAAEAGKFVLNQILSDQSSENRFLNILTHLSQLREDLQEGKVPLSLLV 1078
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITKQL+KNP++Y + +T HVQ
Sbjct: 1079 ITKQLSKNPDQYPEDNTLPHVQ 1100
>UniRef50_P26019 Cluster: DNA polymerase alpha catalytic subunit; n=2;
Sophophora|Rep: DNA polymerase alpha catalytic subunit -
Drosophila melanogaster (Fruit fly)
Length = 1488
Score = 118 bits (285), Expect = 8e-26
Identities = 51/89 (57%), Positives = 71/89 (79%), Gaps = 2/89 (2%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSE--HLKVDFKYYLAH 428
VALR+N + +RR+KKGD+V Y+IC DGT N+A QRAYH++ELK SE L++D YYL H
Sbjct: 1167 VALRMNRERNRRYKKGDMVDYVICLDGTTNAAMQRAYHLDELKTSEDKKLQLDTNYYLGH 1226
Query: 429 QLHPVISRICEPIEGMDPARVADCLGLIP 515
Q+HPV++R+ E +EG D +R+A+CLG+ P
Sbjct: 1227 QIHPVVTRMVEVLEGTDASRIAECLGMDP 1255
Score = 81.0 bits (191), Expect = 2e-14
Identities = 36/82 (43%), Positives = 54/82 (65%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLDIVR DWS LA GK +L ++LSE+ +++L+++ L K+K + +PL +
Sbjct: 1085 KGLDIVRRDWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFV 1144
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITKQLT+ P EYA+ + HVQ
Sbjct: 1145 ITKQLTRTPQEYANSASLPHVQ 1166
>UniRef50_UPI0000DB7455 Cluster: PREDICTED: similar to DNA polymerase
alpha catalytic subunit; n=1; Apis mellifera|Rep:
PREDICTED: similar to DNA polymerase alpha catalytic
subunit - Apis mellifera
Length = 1239
Score = 115 bits (277), Expect = 8e-25
Identities = 49/84 (58%), Positives = 63/84 (75%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VALRLN + R +K GD VPYIIC+DGT SAT+RAYHI+E K ++ LK+D YYL +Q+
Sbjct: 992 VALRLNKEGGRMWKTGDTVPYIICDDGTEKSATERAYHIDEYKKNDFLKIDVNYYLLNQI 1051
Query: 435 HPVISRICEPIEGMDPARVADCLG 506
P++ RIC+PIEG D +A CLG
Sbjct: 1052 FPIVLRICDPIEGFDDVLLAKCLG 1075
Score = 80.6 bits (190), Expect = 3e-14
Identities = 42/82 (51%), Positives = 55/82 (67%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLDIVR DW LA + GK IL +LS Q +DR+E I L+ + ++ N++ LS L
Sbjct: 911 KGLDIVRRDWCQLACDTGKKILDHLLSNQPCEDRIEQIFMILHDVAQNVRENQISLSSLV 970
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITKQL+KNPNEY D Q+HVQ
Sbjct: 971 ITKQLSKNPNEYPDT-KQAHVQ 991
>UniRef50_UPI00015B4719 Cluster: PREDICTED: similar to DNA polymerase
alpha catalytic subunit; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to DNA polymerase alpha catalytic
subunit - Nasonia vitripennis
Length = 1512
Score = 114 bits (274), Expect = 2e-24
Identities = 49/85 (57%), Positives = 63/85 (74%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VALRLN R++K GD VPYIICEDGT + +RAYHIEE K +++LK+D YYL Q+
Sbjct: 1188 VALRLNESGGRKWKAGDTVPYIICEDGTDKTPLERAYHIEEFKKNDNLKIDVNYYLLQQI 1247
Query: 435 HPVISRICEPIEGMDPARVADCLGL 509
HPV+ RICEPIEG+D +A +G+
Sbjct: 1248 HPVVLRICEPIEGIDDVLLAQHIGV 1272
Score = 78.2 bits (184), Expect = 1e-13
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLDIVR DW LA + G IL Q+LS+Q+ + R+ I + L ++ ++L +PLS+L
Sbjct: 1106 KGLDIVRRDWCGLACDIGNQILDQLLSDQSSESRVGKIFDILQQVGNNLREGNLPLSLLV 1165
Query: 190 ITKQLTKNPNEYADKHTQSHV 252
ITKQL+KNP+EY + SHV
Sbjct: 1166 ITKQLSKNPHEYPNDKKLSHV 1186
>UniRef50_Q16ZB1 Cluster: DNA polymerase; n=2; Culicidae|Rep: DNA
polymerase - Aedes aegypti (Yellowfever mosquito)
Length = 1508
Score = 113 bits (273), Expect = 2e-24
Identities = 51/90 (56%), Positives = 69/90 (76%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELK---NSEHLKVDFKYYLA 425
VA+R+N + +R FK+GD+V YIIC+DGT+ +A +RAYHI+ELK N + LK D +YYL+
Sbjct: 1168 VAMRMNKQRNRNFKRGDVVGYIICDDGTSAAAMKRAYHIDELKDPANKDKLKPDVEYYLS 1227
Query: 426 HQLHPVISRICEPIEGMDPARVADCLGLIP 515
Q+ PV+ RICEP+EG D R+A CLGL P
Sbjct: 1228 QQVFPVVFRICEPLEGTDACRLAMCLGLDP 1257
Score = 89.0 bits (211), Expect = 8e-17
Identities = 43/81 (53%), Positives = 57/81 (70%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLDIVR DWS LA AG F++S+ILS++ DDR+E+I L KL+DDL+ S+L
Sbjct: 1086 KGLDIVRRDWSKLAVIAGNFVISEILSDKPMDDRIENIHTKLEKLRDDLLNGVTYPSLLE 1145
Query: 190 ITKQLTKNPNEYADKHTQSHV 252
ITKQLT++ NEY+D HV
Sbjct: 1146 ITKQLTRSLNEYSDAAQLPHV 1166
>UniRef50_P09884 Cluster: DNA polymerase alpha catalytic subunit;
n=37; Eumetazoa|Rep: DNA polymerase alpha catalytic
subunit - Homo sapiens (Human)
Length = 1462
Score = 103 bits (247), Expect = 3e-21
Identities = 45/87 (51%), Positives = 65/87 (74%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VAL +NS+ R+ K GD V Y+IC+DG+ +A+QRAY E+L+ ++L +D +YYLA Q+
Sbjct: 1157 VALWINSQGGRKVKAGDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQI 1216
Query: 435 HPVISRICEPIEGMDPARVADCLGLIP 515
HPV++RICEPI+G+D +A LGL P
Sbjct: 1217 HPVVARICEPIDGIDAVLIATWLGLDP 1243
Score = 81.0 bits (191), Expect = 2e-14
Identities = 39/96 (40%), Positives = 60/96 (62%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLDIVR DW LA + G F++ QILS+Q+ D +E+IQ L ++ ++++ +P+S
Sbjct: 1075 KGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFE 1134
Query: 190 ITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGDSK 297
I K LTK+P +Y DK + HV H L + + G K
Sbjct: 1135 INKALTKDPQDYPDKKSLPHV--HVALWINSQGGRK 1168
>UniRef50_Q9NAH1 Cluster: DNA polymerase; n=2; Caenorhabditis|Rep: DNA
polymerase - Caenorhabditis elegans
Length = 1428
Score = 102 bits (244), Expect = 8e-21
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VA RLN + DIV Y+ICEDGT N ATQRAYH E+ + LK+D YYLA Q+
Sbjct: 1122 VAQRLNKSGKFNLRHNDIVEYVICEDGTDNPATQRAYHRTEMAENSALKIDLLYYLAQQI 1181
Query: 435 HPVISRICEPIEGMDPARVADCLGL 509
HPV+SR+ EPIE D R+A+ LGL
Sbjct: 1182 HPVVSRLVEPIEETDAVRIAENLGL 1206
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQ-TPDDRLESIQNHLNKLKDDLIGNKMPLSVL 186
+GLDIVR DWS LA E G ++ +IL T D+ + SI + L +++ L +PL +
Sbjct: 1039 KGLDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAKLDSGTVPLEMF 1098
Query: 187 AITKQLTKNPNEYADKHTQSH 249
I+KQLT+NP +YAD Q H
Sbjct: 1099 QISKQLTRNPEQYADVKAQCH 1119
>UniRef50_Q4SMZ1 Cluster: DNA polymerase; n=3; Deuterostomia|Rep: DNA
polymerase - Tetraodon nigroviridis (Green puffer)
Length = 1753
Score = 80.6 bits (190), Expect(2) = 3e-18
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = +3
Query: 318 IICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVAD 497
++ +DG+ +A+QRAY +E+L+ E L +D +YYLA Q+HPV+SRIC+PIEG+D VA
Sbjct: 1465 VLTQDGSTLAASQRAYALEQLQKQEALSLDTQYYLAQQVHPVVSRICDPIEGIDGVLVAT 1524
Query: 498 CLGLIP 515
LGL P
Sbjct: 1525 WLGLDP 1530
Score = 78.2 bits (184), Expect = 1e-13
Identities = 39/93 (41%), Positives = 58/93 (62%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLDIVR DW LA + G +++ QILS+Q+ D +E+IQ HL ++ + + +PLS
Sbjct: 1327 KGLDIVRRDWCDLAKDCGNYVIGQILSDQSRDVIVENIQKHLVEVGEKVAAGDVPLSQYE 1386
Query: 190 ITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVG 288
I K LTK+P +Y DK + HV H L + + G
Sbjct: 1387 IHKALTKDPQDYPDKKSLPHV--HVALWINSQG 1417
Score = 33.9 bits (74), Expect(2) = 3e-18
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICE 329
VAL +NS+ RR K GD V YIIC+
Sbjct: 1409 VALWINSQGGRRVKAGDTVSYIICK 1433
>UniRef50_Q4P5T4 Cluster: DNA polymerase; n=1; Ustilago maydis|Rep:
DNA polymerase - Ustilago maydis (Smut fungus)
Length = 1667
Score = 86.6 bits (205), Expect = 4e-16
Identities = 42/93 (45%), Positives = 66/93 (70%), Gaps = 6/93 (6%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIIC--EDGTANSAT---QRAYHIEELKNSE-HLKVDFKY 416
VALR+ ++ + GD++PYI C EDGT+++ T +RA+H +EL+ + LK+D+++
Sbjct: 1319 VALRMKTRGGNA-RMGDVIPYIFCLGEDGTSSTKTAQAERAHHPDELRRKDSELKIDYEH 1377
Query: 417 YLAHQLHPVISRICEPIEGMDPARVADCLGLIP 515
YLA Q+ P + R+CE IEG D +R+A+CLGL P
Sbjct: 1378 YLALQILPPVERLCESIEGTDRSRLAECLGLDP 1410
Score = 56.0 bits (129), Expect = 7e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+ R ++S L+ ++L QILS Q + +E I +L+ + + ++ L
Sbjct: 1237 KGLDMKRREYSALSKNVSNYVLEQILSGQATELVVEHIHEYLSDISTKIKMGEVGLDDFI 1296
Query: 190 ITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGDSKK 300
I K+L KNP +Y D +Q HVQ L +KT G + +
Sbjct: 1297 IYKRLGKNPEDYPDVKSQPHVQV--ALRMKTRGGNAR 1331
>UniRef50_A7PLB6 Cluster: Chromosome chr7 scaffold_20, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_20, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1495
Score = 85.4 bits (202), Expect = 9e-16
Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Frame = +3
Query: 255 VALRLNSKN-SRRFKKGDIVPYIIC-EDGTANSAT----QRAYHIEELKNSE-HLKVDFK 413
VALRL S GD VPYIIC E GT++ ++ QRA H +ELK +D
Sbjct: 1173 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSTGIAQRARHPDELKRDNGKWMIDID 1232
Query: 414 YYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
YYLA Q+HPV+SR+C I+G PAR+ADCLGL
Sbjct: 1233 YYLAQQIHPVVSRLCASIQGTSPARLADCLGL 1264
Score = 77.8 bits (183), Expect = 2e-13
Identities = 41/82 (50%), Positives = 54/82 (65%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR DWS L+ E G F LSQILS + +D +ESI N L K+++D+ ++ L
Sbjct: 1092 KGLDMVRRDWSLLSKELGDFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYI 1151
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK LTK P Y DK+ Q HVQ
Sbjct: 1152 ITKSLTKPPEAYPDKN-QPHVQ 1172
>UniRef50_O48653 Cluster: DNA polymerase alpha catalytic subunit; n=4;
Oryza sativa|Rep: DNA polymerase alpha catalytic subunit
- Oryza sativa subsp. japonica (Rice)
Length = 1534
Score = 85.0 bits (201), Expect = 1e-15
Identities = 44/91 (48%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSA-----TQRAYHIEELK-NSEHLKVDFKY 416
VALRL GD VPYIIC + S QRA H EELK N + +D Y
Sbjct: 1208 VALRLKQNGYSGCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDY 1267
Query: 417 YLAHQLHPVISRICEPIEGMDPARVADCLGL 509
YL+ Q+HPV+SR+C I+G PAR+A+CLGL
Sbjct: 1268 YLSQQIHPVVSRLCASIQGTSPARLAECLGL 1298
Score = 76.6 bits (180), Expect = 4e-13
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR DWS L+ E G F L+QILS + DD +ESI + L ++++ + G + L
Sbjct: 1126 KGLDMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYI 1185
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK LTK P +Y D Q HVQ
Sbjct: 1186 ITKSLTKAPEDYPDAKNQPHVQ 1207
>UniRef50_Q9FHA3 Cluster: DNA polymerase alpha catalytic subunit; n=1;
Arabidopsis thaliana|Rep: DNA polymerase alpha catalytic
subunit - Arabidopsis thaliana (Mouse-ear cress)
Length = 1492
Score = 82.6 bits (195), Expect = 7e-15
Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 8/95 (8%)
Frame = +3
Query: 255 VALRLNSKNSRR-FKKGDIVPYIIC-EDGTANSAT-----QRAYHIEELKNS-EHLKVDF 410
VALR+ + + F D VPYIIC E G A+SA+ +RA H +E+K+ VD
Sbjct: 1200 VALRMRQRGYKEGFNAKDTVPYIICYEQGNASSASSAGIAERARHPDEVKSEGSRWLVDI 1259
Query: 411 KYYLAHQLHPVISRICEPIEGMDPARVADCLGLIP 515
YYLA Q+HPV+SR+C I+G P R+A+CLGL P
Sbjct: 1260 DYYLAQQIHPVVSRLCAEIQGTSPERLAECLGLDP 1294
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G+D+VR DWS L+ E G LS+IL + +D +E+I N L K+K+++ ++ L
Sbjct: 1118 KGVDMVRRDWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYV 1177
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK LTK P Y D +Q HVQ
Sbjct: 1178 ITKTLTKPPAAYPDSKSQPHVQ 1199
>UniRef50_UPI00015B62CE Cluster: PREDICTED: similar to DNA polymerase
alpha catalytic subunit; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to DNA polymerase alpha catalytic
subunit - Nasonia vitripennis
Length = 1120
Score = 80.2 bits (189), Expect = 4e-14
Identities = 37/85 (43%), Positives = 54/85 (63%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VA RLN N+R++K GD+ D T +RAYHIEE K +E +K+D YYL + +
Sbjct: 827 VAERLNKINARKWKAGDV-------DNTTRKPLERAYHIEEFKTNEQIKIDETYYLMYHI 879
Query: 435 HPVISRICEPIEGMDPARVADCLGL 509
P+I +IC+PIEG++ +A LG+
Sbjct: 880 FPIIHKICDPIEGIENVLIAQSLGI 904
Score = 55.6 bits (128), Expect = 9e-07
Identities = 27/76 (35%), Positives = 48/76 (63%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL+I+R D LA++ G +L ++L +Q R ++I L +L K+P+S L
Sbjct: 746 KGLEIIRRDCCALASDTGHKVLEELLKDQPSHIRSKNIFEILETTNRELREGKLPMSSLE 805
Query: 190 ITKQLTKNPNEYADKH 237
ITK+L+K+P++Y +K+
Sbjct: 806 ITKKLSKDPDKYPNKN 821
>UniRef50_Q7ZA56 Cluster: DNA polymerase; n=1; Coprinopsis
cinerea|Rep: DNA polymerase - Coprinus cinereus (Inky cap
fungus) (Hormographiella aspergillata)
Length = 1426
Score = 79.8 bits (188), Expect = 5e-14
Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIIC----EDGTANSATQRAYHIEELKNSEHL-KVDFKYY 419
VALR+ +K + GD++PYI C E+ + RA H +E++ + K+D+++Y
Sbjct: 1130 VALRMKAKGQSA-RGGDVIPYIFCLGEGEESARTTQADRARHPDEVRRGAGVVKIDYEWY 1188
Query: 420 LAHQLHPVISRICEPIEGMDPARVADCLGLIP 515
LAHQ+ P I R+C+ IEG D AR+A+CLGL P
Sbjct: 1189 LAHQVLPPIERLCDAIEGTDRARLAECLGLDP 1220
Score = 60.5 bits (140), Expect = 3e-08
Identities = 30/97 (30%), Positives = 56/97 (57%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+ R ++ L+ E +++L++ILS + +D +E+I +L + ++ ++ L
Sbjct: 1048 KGLDMKRREYCALSKEVSQYVLARILSGDSTEDVVETIHEYLGTMSQNVRSGQVKLEDFI 1107
Query: 190 ITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGDSKK 300
+ K+L KNP +Y D +Q HVQ L +K G S +
Sbjct: 1108 VFKRLGKNPEDYPDAKSQPHVQV--ALRMKAKGQSAR 1142
>UniRef50_A7SAB6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1242
Score = 77.4 bits (182), Expect = 2e-13
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLDIVR DW LA +AG ++LSQILS Q+ + ++++ + L + +D+ G K+ L
Sbjct: 858 KGLDIVRRDWCDLAKDAGNYVLSQILSAQSREAIVDNVHDFLITIGEDVKGGKVDLQKYV 917
Query: 190 ITKQLTKNPNEYADKHTQSHVQWH*GLTVKT----VGDSKKATLC 312
I KQLTK P++Y DK + HV L K+ VGD+ +C
Sbjct: 918 INKQLTKAPHDYPDKKSLPHVHVALWLMSKSRKVGVGDTIPYVIC 962
Score = 43.6 bits (98), Expect = 0.004
Identities = 31/87 (35%), Positives = 40/87 (45%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VAL L SK SR+ GD +PY+IC+ + L L
Sbjct: 940 VALWLMSK-SRKVGVGDTIPYVICDVSMHLPLVTCGALVHYLLRYLWRTCTLSLTLPVTH 998
Query: 435 HPVISRICEPIEGMDPARVADCLGLIP 515
IS I +PI+G D AR+A+CLGL P
Sbjct: 999 VYTISYISDPIDGTDSARIAECLGLDP 1025
>UniRef50_Q55RB8 Cluster: DNA polymerase; n=2; Filobasidiella
neoformans|Rep: DNA polymerase - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 1494
Score = 74.9 bits (176), Expect = 1e-12
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 6/93 (6%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICED----GTANSATQRAYHIEELKNS-EHLKVDFKYY 419
VALR+ K + + D++PYIIC D G ++ RA+H ++L+ L++D +YY
Sbjct: 1189 VALRMKQKGAA-VRAHDVIPYIICLDEHGKGGKTASADRAFHPDDLRRQGSELRIDHEYY 1247
Query: 420 LAHQ-LHPVISRICEPIEGMDPARVADCLGLIP 515
L Q LHP++ R+CE IEG + AR+A+CLGL P
Sbjct: 1248 LDQQILHPIL-RLCETIEGTERARLAECLGLDP 1279
Score = 61.7 bits (143), Expect = 1e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+ R ++S ++ +A IL +ILS + + +E I L KL + + N++P+
Sbjct: 1107 KGLDMKRREFSKVSKDASAAILKEILSGEATEVVVEKIHELLTKLGEAVRNNEIPIDDYI 1166
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
I K+L KNP +Y DK +Q HVQ
Sbjct: 1167 IFKRLGKNPEDYPDKKSQPHVQ 1188
>UniRef50_O00874 Cluster: DNA polymerase alpha catalytic subunit;
n=32; Trypanosomatidae|Rep: DNA polymerase alpha
catalytic subunit - Leishmania donovani
Length = 1339
Score = 72.9 bits (171), Expect = 5e-12
Identities = 32/100 (32%), Positives = 64/100 (64%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VALR+ + + GD++PY+IC T + + +A+H+EE++ + L++D ++YL+ Q+
Sbjct: 1055 VALRMKQRKEL-VRVGDLIPYVIC---TGDRLSDKAFHVEEVRQNSQLQIDSEWYLSVQI 1110
Query: 435 HPVISRICEPIEGMDPARVADCLGLIPPDTNKLLKEKPTT 554
+P + R+CE I+G A++++ +G+ KL +E+ T
Sbjct: 1111 YPPVMRLCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAET 1150
Score = 49.2 bits (112), Expect = 8e-05
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR DW L+ +LS++L+ + +D L+ + N++ + + + + L
Sbjct: 974 KGLDMVRRDWCPLSKCVCDSVLSRVLNAEGSEDILDYVMNYMRDVSEKVRAGRYTLDNFV 1033
Query: 190 ITKQLTKNPNEY 225
I+K LTK P Y
Sbjct: 1034 ISKSLTKEPEAY 1045
>UniRef50_Q013X2 Cluster: DNA polymerase; n=2; Ostreococcus|Rep: DNA
polymerase - Ostreococcus tauri
Length = 1530
Score = 70.9 bits (166), Expect = 2e-11
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 15/104 (14%)
Frame = +3
Query: 264 RLNSKNSRRFKKGDIVPYIICEDGTAN---------SAT------QRAYHIEELKNSEHL 398
RL + + G+ VPYII + A+ AT +RAYH +E+K +L
Sbjct: 1203 RLEAGKQDGVRAGETVPYIIAMESDASLEDIASGKAGATGGKGLAERAYHPDEVKE-RNL 1261
Query: 399 KVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGLIPPDTNK 530
K+D YYL+ Q+HPVISR+C PIE D A++A+CLG+ D+NK
Sbjct: 1262 KIDLHYYLSQQVHPVISRLCAPIEETDGAKMAECLGM---DSNK 1302
Score = 66.9 bits (156), Expect = 4e-10
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILS-EQTPDDRLESIQNHLNKLKDDLIGNKMPLSVL 186
+GLDIVR DW+ L E GK L ++L + ++R+ +I + L +++ +++ N++PL
Sbjct: 1116 KGLDIVRRDWAPLVKEIGKQTLEELLEVDGELEERVTAIHDLLREIRVEMVANRVPLDKY 1175
Query: 187 AITKQLTKNPNEYADKHTQSHV 252
ITKQLTK EY D Q HV
Sbjct: 1176 IITKQLTKAVEEYPDAKHQPHV 1197
>UniRef50_P28040 Cluster: DNA polymerase alpha catalytic subunit; n=2;
Schizosaccharomyces pombe|Rep: DNA polymerase alpha
catalytic subunit - Schizosaccharomyces pombe (Fission
yeast)
Length = 1405
Score = 70.9 bits (166), Expect = 2e-11
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQ 431
VAL+ ++ + GD++P+II RAY +E+ N+ L +D+ YYL+HQ
Sbjct: 1133 VALKKKARGEN-VRVGDVIPFIIAGSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQ 1191
Query: 432 LHPVISRICEPIEGMDPARVADCLGL 509
+ P I R+ PIEG + AR+A+CLGL
Sbjct: 1192 ILPPIERVIAPIEGTNRARLAECLGL 1217
Score = 56.4 bits (130), Expect = 5e-07
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+ R ++ LA EA KF L QILS + + +E+I ++L + + K P +
Sbjct: 1051 KGLDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFSEKMRNGKFPANKFI 1110
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
I +L KNP +Y + T VQ
Sbjct: 1111 IFNRLGKNPEDYPNGKTMPFVQ 1132
>UniRef50_Q8I944 Cluster: DNA polymerase; n=3; Urostyla grandis|Rep:
DNA polymerase - Urostyla grandis
Length = 1356
Score = 69.3 bits (162), Expect = 7e-11
Identities = 34/81 (41%), Positives = 48/81 (59%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR DW LA AG F+L QILS Q +D + ++ HL+ L + N++PL
Sbjct: 1071 KGLDMVRRDWCALAKNAGDFVLDQILSGQQREDIVLTLTEHLSNLGQRMKNNQIPLKEYV 1130
Query: 190 ITKQLTKNPNEYADKHTQSHV 252
I KQ+T+ +EY D HV
Sbjct: 1131 INKQITRALSEYHDTKALPHV 1151
Score = 60.9 bits (141), Expect = 2e-08
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKG-DIVPYIIC--EDGTANSATQRAYHIEELKNSE-HLKVDFKYYL 422
VA+ L KN + + + +PY+IC +D + +++AYH +E+ S+ +++D +Y+
Sbjct: 1151 VAVALRLKNQGKSEADLNFIPYVICTEQDKKSQFLSEKAYHPDEVLTSKGKIQLDVDWYI 1210
Query: 423 AHQLHPVISRICEPIEGMDPARVADCLGLIP 515
Q+ P+ISR+ E IEG++ +A C G+ P
Sbjct: 1211 TQQILPIISRLIEHIEGIEADFIAQCFGIDP 1241
>UniRef50_A3QME0 Cluster: DNA polymerase; n=2; Euplotes|Rep: DNA
polymerase - Euplotes aediculatus
Length = 1404
Score = 66.1 bits (154), Expect = 6e-10
Identities = 30/68 (44%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Frame = +3
Query: 309 VPYIICEDGTANSATQRAYHIEELKNSE-HLKVDFKYYLAHQLHPVISRICEPIEGMDPA 485
+PYIIC+ G A QRAY EE++ ++ +L++D+ +YL+ Q++P ISR+ E IEG+D
Sbjct: 1114 IPYIICQ-GEAKQYAQRAYLPEEIQKAQGNLQIDYDWYLSQQIYPPISRLIEHIEGIDGR 1172
Query: 486 RVADCLGL 509
+ +C GL
Sbjct: 1173 FICECFGL 1180
Score = 60.1 bits (139), Expect = 4e-08
Identities = 28/81 (34%), Positives = 47/81 (58%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL +VR DW L+ G ++L +ILS ++ D +++ + + D L N++ +
Sbjct: 1012 KGLXMVRRDWCPLSKAIGNYVLGEILSSKSQDXXQINLRAYFTDMXDKLKNNEIKMKDFI 1071
Query: 190 ITKQLTKNPNEYADKHTQSHV 252
ITKQLT+ P+EY + T HV
Sbjct: 1072 ITKQLTRPPSEYNNPDTFPHV 1092
>UniRef50_Q27152 Cluster: DNA polymerase alpha catalytic subunit;
n=21; Spirotrichea|Rep: DNA polymerase alpha catalytic
subunit - Oxytricha trifallax (Sterkiella
histriomuscorum)
Length = 1513
Score = 65.7 bits (153), Expect = 8e-10
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR DW L+ G F+L+QILS + +D + ++ +L+ + + + N + L
Sbjct: 1121 KGLDMVRRDWCPLSKNVGNFVLNQILSGKQREDVVLNLNEYLSDIGEKMKNNGITLDQFI 1180
Query: 190 ITKQLTKNPNEYADKHTQSHV 252
ITKQLTK +EY+D Q HV
Sbjct: 1181 ITKQLTKAISEYSDIKGQPHV 1201
Score = 50.0 bits (114), Expect = 4e-05
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Frame = +3
Query: 255 VALRL-NSKNSRRFKKGDIVPYIICEDGTANSATQ-----RAYHIEELKNSE-HLKVDFK 413
VA RL N S + +PY+I S T +AYH EE+ +S+ + +D +
Sbjct: 1203 VAQRLKNQGKSESDLVNNFIPYVIGAQPFDPSKTNPALAGKAYHPEEVVSSKGKILLDIE 1262
Query: 414 YYLAHQLHPVISRICEPIEGMDPARVADCLGLIPPDTNKLLKEKPT 551
+Y+ Q+ P I+R+ E I+G+D VA CLG+ P EK T
Sbjct: 1263 WYITMQVLPPITRLIEHIDGIDVEFVAQCLGVDPKKYKYHSSEKKT 1308
>UniRef50_Q4N0E2 Cluster: DNA polymerase alpha, putative; n=3;
Theileria|Rep: DNA polymerase alpha, putative - Theileria
parva
Length = 1451
Score = 61.7 bits (143), Expect = 1e-08
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQT---PDDRLESIQNHLNKLKDDLIGNKMPLS 180
+GLD +R DWS L E G +L+ IL+ D ++ I + L L + L + LS
Sbjct: 978 KGLDFIRRDWSLLTKEIGNKLLNIILNSNYYDGVDGIVQEIHSTLINLNEQLNNQSIELS 1037
Query: 181 VLAITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGD 291
ITKQLTKNP EY+D HV L K +G+
Sbjct: 1038 KFLITKQLTKNPKEYSDVQNLPHVSVALRLNEKGLGN 1074
Score = 41.5 bits (93), Expect = 0.015
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 26/109 (23%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTA------------NSATQ-------------- 356
VALRLN K + G + YIIC +A NSA
Sbjct: 1063 VALRLNEKGLGNYSTGHEISYIICTKSSATKFHTNTTSDKDNSAENNVNSSGNIGGSLSF 1122
Query: 357 RAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCL 503
RA+ E+ + L+VD YY QL P I R+C IEG D R++ CL
Sbjct: 1123 RAFSYNEVMENG-LEVDISYYKQQQLLPPILRLCSIIEGTDIQRLSRCL 1170
>UniRef50_Q5CU42 Cluster: DNA polymerase; n=2; Cryptosporidium|Rep:
DNA polymerase - Cryptosporidium parvum Iowa II
Length = 1488
Score = 60.5 bits (140), Expect = 3e-08
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR DWS L +L+ + S + D + +I N L L + L N +PL
Sbjct: 1080 KGLDLVRRDWSILTRNVSTQLLNLLFSNEPIDTVITNILNTLESLNEALNSNSIPLESFI 1139
Query: 190 ITKQLTKNPNEYADKHTQSHV 252
ITK LTK P Y+D + HV
Sbjct: 1140 ITKTLTKLPQFYSDPYLLPHV 1160
Score = 58.8 bits (136), Expect = 9e-08
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSA----------TQRAYHIEELKNSEHLKVDFKYYLAHQLHPVIS 449
G +PYIIC++ + S+ ++RAY EE+K S L +D ++Y QL P +S
Sbjct: 1176 GTEIPYIICKEVNSQSSDEVAPKSSMLSKRAYSPEEVK-SNGLNIDIEWYKTQQLLPPLS 1234
Query: 450 RICEPIEGMDPARVADCLGL 509
R+C PI G++ +R+ CLGL
Sbjct: 1235 RLCAPIPGLEISRIGQCLGL 1254
>UniRef50_Q5B0J8 Cluster: DNA polymerase; n=28; Eukaryota|Rep: DNA
polymerase - Emericella nidulans (Aspergillus nidulans)
Length = 2019
Score = 60.1 bits (139), Expect = 4e-08
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSA---TQRAYHIEE-LKNSEHLKVDFKYYL 422
VALR ++ + + D++ YI+ + S+ +R+Y +++ +K LK D ++YL
Sbjct: 1152 VALRELARG-KTVRPNDVISYIVTSGDSETSSLPPAKRSYTLQDVIKPDSRLKPDIEFYL 1210
Query: 423 AHQLHPVISRICEPIEGMDPARVADCLGL 509
Q+ P I R+C PI G D R+A+CLGL
Sbjct: 1211 LKQIFPPIERLCAPIPGTDAVRLAECLGL 1239
Score = 46.4 bits (105), Expect = 5e-04
Identities = 24/82 (29%), Positives = 45/82 (54%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+ R ++ L+ EA + +L++ILS + L + ++L +L ++ +P+
Sbjct: 1070 KGLDMKRREYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNMREYTIPVQKYV 1129
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
I +L+K P EY +K T Q
Sbjct: 1130 IYTKLSKRPEEYPNKETMPPAQ 1151
>UniRef50_Q23AJ0 Cluster: DNA polymerase catalytic subunit; n=2;
cellular organisms|Rep: DNA polymerase catalytic subunit
- Tetrahymena thermophila SB210
Length = 1396
Score = 59.7 bits (138), Expect = 5e-08
Identities = 28/76 (36%), Positives = 48/76 (63%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G+D+VR DW L+ +AG IL IL ++ ++ L+ I+ +L +L DD+ + S
Sbjct: 1069 KGIDVVRRDWCQLSRDAGNKILEIILESKSSENMLDDIKKYLIQLNDDINQKNIKNSNYY 1128
Query: 190 ITKQLTKNPNEYADKH 237
ITK+LTK ++Y +K+
Sbjct: 1129 ITKRLTKRVDQYGEKN 1144
Score = 34.3 bits (75), Expect = 2.3
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 357 RAYHIEE-LKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCL 503
+AY +E + S+ L++D +YY QL I R+ E IEG++ +A L
Sbjct: 1204 KAYSPQEFITQSKSLEIDLQYYKRFQLFEPIKRMLEVIEGINLQEIASIL 1253
>UniRef50_Q8TWJ5 Cluster: DNA polymerase; n=1; Methanopyrus
kandleri|Rep: DNA polymerase - Methanopyrus kandleri
Length = 830
Score = 58.4 bits (135), Expect = 1e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL++VR DW+ +A E + +L +IL++ P+ L+ I L +LK + + LA
Sbjct: 665 KGLEVVRRDWAPIARETQRRVLKRILADNDPEAALKEIHEVLERLK----SGDVDIDELA 720
Query: 190 ITKQLTKNPNEYADK 234
+T QLTK P+EY K
Sbjct: 721 VTSQLTKKPSEYVQK 735
Score = 35.9 bits (79), Expect = 0.75
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +3
Query: 258 ALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLH 437
ALRL + G IV Y+I S + +AY +E L E + D YY+ HQ+
Sbjct: 742 ALRLARHLGVEPEPGTIVRYVIVRG--PGSVSDKAYPVE-LVREEGKEPDVDYYIEHQIL 798
Query: 438 PVISRICEPI 467
P + RI I
Sbjct: 799 PAVERIMRAI 808
>UniRef50_A7AR93 Cluster: DNA polymerase alpha subunit, putative; n=1;
Babesia bovis|Rep: DNA polymerase alpha subunit, putative
- Babesia bovis
Length = 1483
Score = 58.0 bits (134), Expect = 2e-07
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDL--IGNK----- 168
+GLD +R DWS L E G +L+ IL+++ D ++N + K+ + L + NK
Sbjct: 1023 KGLDFIRRDWSILTKEVGNALLAIILNDKVNDPEELGVENTVEKIHETLRDVNNKIAEGN 1082
Query: 169 MPLSVLAITKQLTKNPNEYADKHTQSHV 252
+P IT+QL KNP EY + HV
Sbjct: 1083 IPPKAWIITRQLAKNPQEYGQNNNLPHV 1110
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +3
Query: 330 DGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
D S RAY + E + + L+ D +YY QL P I R+C IEG DP ++A CL
Sbjct: 1158 DVKLRSLCNRAYSLTEFQQ-KGLEPDIQYYKTQQLLPPILRLCGVIEGTDPQKLASCL-Q 1215
Query: 510 IPPDTNKLL 536
I D N+ +
Sbjct: 1216 IQDDVNRTI 1224
>UniRef50_A5DZ55 Cluster: DNA polymerase; n=5; Saccharomycetales|Rep:
DNA polymerase - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 1529
Score = 58.0 bits (134), Expect = 2e-07
Identities = 34/113 (30%), Positives = 58/113 (51%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+ R ++ L+ E F+L +ILS P++ L + +L +++D +I N++P
Sbjct: 1128 KGLDMRRREYCQLSKEISTFVLMKILSNADPEEALMDVYQYLEEMRDKIIANQVPAIKYK 1187
Query: 190 ITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGDSKKATLCLTLYVKMEPLTQ 348
I +L+K+P Y + VQ L +K G KA +T YV P +
Sbjct: 1188 INTKLSKDPTSYPNGKNMPQVQV--ALKLKNQGKVIKAGSVIT-YVITAPTAE 1237
Score = 45.2 bits (102), Expect = 0.001
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTAN---SATQRAYHIEELK-NSEHLKVDFKYYL 422
VAL+L ++ + K G ++ Y+I N S RA I++L L+ D YYL
Sbjct: 1210 VALKLKNQG-KVIKAGSVITYVITAPTAENDTSSVADRARAIQDLLVQKTELRPDPTYYL 1268
Query: 423 AHQLHPVISRICEPIEGMDPARVADCLGLIPPDTNK-LLKEK 545
Q+ + R+ E I+ +D RVA LG+ DT + +LK K
Sbjct: 1269 EKQIFAPVERLLEKIDSVDMVRVATALGI---DTKRYILKVK 1307
>UniRef50_Q9Y1T1 Cluster: DNA polymerase; n=1; Toxoplasma gondii|Rep:
DNA polymerase - Toxoplasma gondii
Length = 1690
Score = 56.8 bits (131), Expect = 4e-07
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +3
Query: 345 SATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
S +RA+H E+ + LK+D +YYL QL P I R+C +EG +R+A+CLGL
Sbjct: 1553 SPAERAFHPREVAGNPLLKIDAEYYLEQQLLPPIQRMCAFVEGTSASRLAECLGL 1607
>UniRef50_A0D7P3 Cluster: DNA polymerase; n=1; Paramecium
tetraurelia|Rep: DNA polymerase - Paramecium tetraurelia
Length = 1344
Score = 56.8 bits (131), Expect = 4e-07
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 VALRLNSKNSRRFKK--GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAH 428
VALR+ ++ R + + Y+ICED T + + RAY ++EL N ++L +D+ YYL+
Sbjct: 1063 VALRMVNEYGRSAQSLVNHFIRYVICEDPTQKNLSFRAYTVDELIN-KNLTIDYYYYLST 1121
Query: 429 QLHPVISRICEPIEGMDPARVADCLGL 509
Q+ I R+C+ ++ + + +A LGL
Sbjct: 1122 QIFDPIVRLCKNVQVISISELAQILGL 1148
Score = 35.5 bits (78), Expect = 0.99
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDD---RLESIQNHLNKLKDDLIGN----- 165
+G+DIVR ++ ++ + +L +L + DD L ++ + + D L GN
Sbjct: 961 KGIDIVRREFCDISKKMQSHVLDILLKTKNRDDIHGDLITLMQEIRSMFDALSGNSNADP 1020
Query: 166 ------------KMPLSVLAITKQLTKNPNEYADKHTQSHVQ 255
++P S I KQL K P+EY+D + HVQ
Sbjct: 1021 KQLIAQNRFITYEIPTSDFIIVKQLNKAPHEYSDTISAPHVQ 1062
>UniRef50_Q54SV8 Cluster: DNA polymerase; n=1; Dictyostelium
discoideum AX4|Rep: DNA polymerase - Dictyostelium
discoideum AX4
Length = 1509
Score = 55.2 bits (127), Expect = 1e-06
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G+DIVR D+ L + G+++L+ IL + I+ +L ++ + N + +
Sbjct: 1119 KGIDIVRRDYCDLTKDIGQWVLNLILGGEEKIALFSLIKEYLESVQQQIKDNTLAVEKFI 1178
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK L+K P EY D Q HVQ
Sbjct: 1179 ITKTLSKQPEEYNDADIQPHVQ 1200
>UniRef50_A0B8Z8 Cluster: DNA polymerase; n=1; Methanosaeta
thermophila PT|Rep: DNA polymerase - Methanosaeta
thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 941
Score = 52.4 bits (120), Expect = 8e-06
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKD-DLIGNKMPLSVL 186
RG++ VR DW L ++ + L IL E DD ++ +++ + +L+D D+ ++ L L
Sbjct: 759 RGMETVRRDWCDLTSKTLRRCLELILKEGRVDDAVQHVRDVIQRLRDMDIRRDRELLDDL 818
Query: 187 AITKQLTKNPNEYADKHTQSHVQ 255
+T++ TK+P+ Y +K Q H+Q
Sbjct: 819 VLTRRFTKDPSSYRNK--QPHIQ 839
>UniRef50_UPI0000499846 Cluster: DNA polymerase alpha catalytic
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep: DNA
polymerase alpha catalytic subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1132
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/95 (30%), Positives = 53/95 (55%)
Frame = +3
Query: 276 KNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 455
K+S+ +K GD V Y+I + S++ R+ ++ ++ E + D++YYL Q++ +SR+
Sbjct: 893 KSSKHYKAGDQVKYLIEKGDNTKSSSDRSIPLDVVEKLEKFEPDYEYYLDTQIYAPVSRL 952
Query: 456 CEPIEGMDPARVADCLGLIPPDTNKLLKEKPTTRK 560
E M+ ++ + LGL P TN + TT K
Sbjct: 953 FEVFPRMN-IKIREWLGL-NPTTNLYSRIAVTTNK 985
Score = 47.6 bits (108), Expect = 2e-04
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR +W L+ E G + + ILS+ + ++ + + + L K+ + L
Sbjct: 810 KGLDVVRREWCPLSKEIGYYCIDLILSDPGLVKMQQILEIYFKNMAEKLRSGKVDIHQLV 869
Query: 190 ITKQLTKNPNEYADK 234
ITK L K+P Y K
Sbjct: 870 ITKGLNKDPQSYPQK 884
>UniRef50_Q0W0J7 Cluster: DNA-directed DNA polymerase B; n=1;
uncultured methanogenic archaeon RC-I|Rep: DNA-directed
DNA polymerase B - Uncultured methanogenic archaeon RC-I
Length = 798
Score = 49.6 bits (113), Expect = 6e-05
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
RGL++ R DW +A E ++ IL E+ PD + +++ + K+K K+PL L
Sbjct: 626 RGLEVRRGDWCEIAKELQSEVIRIILEEENPDKAAKFVKDTVQKVK----SGKVPLDALV 681
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
I K LTK+ Y + Q+HV+
Sbjct: 682 IHKTLTKSVTRY--ESAQAHVK 701
>UniRef50_A3QME1 Cluster: DNA polymerase; n=1; Eschaneustyla sp.
WJC-2005|Rep: DNA polymerase - Eschaneustyla sp. WJC-2005
Length = 1548
Score = 49.2 bits (112), Expect = 8e-05
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +3
Query: 303 DIVPYIICEDGTANSATQ-RAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEGM 476
+ + Y+IC+ NS + +AY +E N ++ L++D +Y+ Q+ P I+R+ E I+G+
Sbjct: 1240 NFIKYVICKIEKDNSTLEEKAYTPDEFLNKKNNLQLDLDWYIQQQILPPITRLIEHIDGI 1299
Query: 477 DPARVADCLGLIP 515
+ VA CLG+ P
Sbjct: 1300 EIDFVAQCLGVDP 1312
Score = 46.8 bits (106), Expect = 4e-04
Identities = 24/81 (29%), Positives = 43/81 (53%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR +W L+ + F+L QILS + +D + + +L+++ + + L
Sbjct: 1143 KGLDMVRREWCALSKKVSGFVLDQILSGKQREDVVLQLNEYLSEVGRKMKESSYNLGEFI 1202
Query: 190 ITKQLTKNPNEYADKHTQSHV 252
ITKQL + +Y + HV
Sbjct: 1203 ITKQLNRALKDYQNSKGLPHV 1223
>UniRef50_Q6C675 Cluster: DNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA polymerase - Yarrowia lipolytica
(Candida lipolytica)
Length = 1375
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/85 (30%), Positives = 47/85 (55%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VALR + ++GD++ ++I G+ SA + +L + L+ D +YY++ QL
Sbjct: 1093 VALR-RLERGEVIREGDVMSFVITTVGSDESAKAQTTMDVKLSRGK-LQPDAEYYISKQL 1150
Query: 435 HPVISRICEPIEGMDPARVADCLGL 509
+P I R+ + G DP R+ + LG+
Sbjct: 1151 YPQIERLLAHVTGTDPVRLGEVLGI 1175
Score = 35.1 bits (77), Expect = 1.3
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKM------ 171
+GLD+ R + ++ +A ++L Q+L + L ++ +L +L + L +
Sbjct: 1005 KGLDLRRRETCQISKDACTYVLEQVLGPDDQETALNNVHEYLFELAEKLRSGPVKDESAP 1064
Query: 172 -PLSVLAITKQLTKNPNEY 225
P+ AI KQL K+P Y
Sbjct: 1065 FPVEHYAILKQLGKDPKAY 1083
>UniRef50_O33845 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu)
[Contains: Tag pol-1 intein (Tsp-TY pol-1) (Intein I);
Tag pol-2 intein (Tsp-TY pol-2) (Intein II); Tag pol-3
intein (Tsp-TY pol-3) (Intein III)]; n=6; cellular
organisms|Rep: DNA polymerase (EC 2.7.7.7) (Pol Tfu)
[Contains: Tag pol-1 intein (Tsp-TY pol-1) (Intein I);
Tag pol-2 intein (Tsp-TY pol-2) (Intein II); Tag pol-3
intein (Tsp-TY pol-3) (Intein III)] - Thermococcus
aggregans
Length = 1829
Score = 47.6 bits (108), Expect = 2e-04
Identities = 24/74 (32%), Positives = 45/74 (60%)
Frame = +1
Query: 4 SARGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSV 183
+ RGL++VR DWS +A E +L IL E + + +E +++ + +++ ++PL
Sbjct: 1662 TTRGLEVVRRDWSEIAKETQAKVLEAILKEDSVEKAVEIVKD----VVEEIAKYQVPLEK 1717
Query: 184 LAITKQLTKNPNEY 225
L I +Q+TK+ +EY
Sbjct: 1718 LVIHEQITKDLSEY 1731
>UniRef50_Q8SRW2 Cluster: DNA polymerase; n=1; Encephalitozoon
cuniculi|Rep: DNA polymerase - Encephalitozoon cuniculi
Length = 956
Score = 46.0 bits (104), Expect = 7e-04
Identities = 23/85 (27%), Positives = 46/85 (54%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
+ALRL + + F++GD+V Y+I + + +RAYH + E +D+ YY++ Q+
Sbjct: 738 LALRLKERGMK-FEQGDVVCYVIGKGDPGQAIHKRAYHPD-----EDFAIDYGYYISSQI 791
Query: 435 HPVISRICEPIEGMDPARVADCLGL 509
P + R+ ++G ++ G+
Sbjct: 792 LPPLLRVVGIVKGFHAGKIGKIFGV 816
>UniRef50_O29753 Cluster: DNA polymerase; n=1; Archaeoglobus
fulgidus|Rep: DNA polymerase - Archaeoglobus fulgidus
Length = 781
Score = 46.0 bits (104), Expect = 7e-04
Identities = 25/82 (30%), Positives = 48/82 (58%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL++ R DW LA + + ++ IL E+ P+ L +++ + ++K+ K+ L +
Sbjct: 605 KGLEVRRGDWCELAKKVQREVIEVILKEKNPEKALSLVKDVILRIKE----GKVSLEEVV 660
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
I K LTK P++Y + Q+HV+
Sbjct: 661 IYKGLTKKPSKY--ESMQAHVK 680
>UniRef50_P30317 Cluster: DNA polymerase (EC 2.7.7.7) (Vent DNA
polymerase) [Contains: Endonuclease PI-TliII (EC 3.1.-.-)
(Tli pol-1 intein) (IVPS2); Endonuclease PI-TliI (EC
3.1.-.-) (Tli pol-2 intein) (IVPS1)]; n=8;
Thermococcaceae|Rep: DNA polymerase (EC 2.7.7.7) (Vent
DNA polymerase) [Contains: Endonuclease PI-TliII (EC
3.1.-.-) (Tli pol-1 intein) (IVPS2); Endonuclease PI-TliI
(EC 3.1.-.-) (Tli pol-2 intein) (IVPS1)] - Thermococcus
litoralis
Length = 1702
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = +1
Query: 4 SARGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSV 183
+ RGL++VR DWS +A E +L IL E + + +E +++ + K+ ++PL
Sbjct: 1535 TTRGLEVVRRDWSEIAKETQAKVLEAILKEGSVEKAVEVVRDVVEKIAK----YRVPLEK 1590
Query: 184 LAITKQLTKNPNEY 225
L I +Q+T++ +Y
Sbjct: 1591 LVIHEQITRDLKDY 1604
>UniRef50_P52431 Cluster: DNA polymerase delta catalytic subunit;
n=50; root|Rep: DNA polymerase delta catalytic subunit -
Mus musculus (Mouse)
Length = 1105
Score = 44.4 bits (100), Expect = 0.002
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL+ VR D L A L +IL ++ PD + H + DL+ N++ +S L
Sbjct: 825 KGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA----HAKDVISDLLCNRIDISQLV 880
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK+LT+ +YA K Q+HV+
Sbjct: 881 ITKELTRAAADYAGK--QAHVE 900
Score = 35.1 bits (77), Expect = 1.3
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEG 473
GD VPY+I G A + L EH L +D +YYL QL + RI EPI G
Sbjct: 917 GDRVPYVII--GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 973
>UniRef50_Q58295 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: Mja
pol-1 intein; Mja pol-2 intein]; n=1; Methanocaldococcus
jannaschii|Rep: DNA polymerase (EC 2.7.7.7) [Contains:
Mja pol-1 intein; Mja pol-2 intein] - Methanococcus
jannaschii
Length = 1634
Score = 43.6 bits (98), Expect = 0.004
Identities = 28/84 (33%), Positives = 45/84 (53%)
Frame = +1
Query: 4 SARGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSV 183
+ +GL+ VR DWS +A + +L +L E + + + IQ+ + L++ K+
Sbjct: 1471 TVKGLEFVRRDWSNIAKITQRRVLEALLVEGSIEKAKKIIQDVIKDLRE----KKIKKED 1526
Query: 184 LAITKQLTKNPNEYADKHTQSHVQ 255
L I QLTK+P EY K T HV+
Sbjct: 1527 LIIYTQLTKDPKEY--KTTAPHVE 1548
Score = 37.1 bits (82), Expect = 0.33
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +3
Query: 276 KNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 455
+ +R K GDI+ YII + GT S ++RA EE+ + +D YY+ +Q+ P + RI
Sbjct: 1555 REGKRIKVGDIIGYIIVK-GT-KSISERAKLPEEVDIDD---IDVNYYIDNQILPPVLRI 1609
Query: 456 CEPI 467
E +
Sbjct: 1610 MEAV 1613
>UniRef50_P13382 Cluster: DNA polymerase alpha catalytic subunit A;
n=6; Saccharomycetales|Rep: DNA polymerase alpha
catalytic subunit A - Saccharomyces cerevisiae (Baker's
yeast)
Length = 1468
Score = 43.6 bits (98), Expect = 0.004
Identities = 25/106 (23%), Positives = 53/106 (50%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+ R ++ L+ + +L+ ILS++ P++ L+ + ++L ++ + N + +
Sbjct: 1069 KGLDMKRREFCPLSRDVSIHVLNTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYK 1128
Query: 190 ITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGDSKKATLCLTLYV 327
I +L+K+P Y VQ L ++ G KA +T +
Sbjct: 1129 INMKLSKDPKAYPGGKNMPAVQV--ALRMRKAGRVVKAGSVITFVI 1172
Score = 41.5 bits (93), Expect = 0.015
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICE--------DGTANSATQRAYHIEELK-NSEHLKVD 407
VALR+ K R K G ++ ++I + D A S +RA+ + E+ S +L D
Sbjct: 1151 VALRMR-KAGRVVKAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIPD 1209
Query: 408 FKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
+YYL Q+ + R+ E I+ + R+++ LGL
Sbjct: 1210 PQYYLEKQIFAPVERLLERIDSFNVVRLSEALGL 1243
>UniRef50_Q308M6 Cluster: DNA polymerase; n=1; Homo sapiens|Rep: DNA
polymerase - Homo sapiens (Human)
Length = 1133
Score = 43.2 bits (97), Expect = 0.005
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL+ VR D L A L ++L ++ P+ + Q+ ++ DL+ N++ +S L
Sbjct: 853 KGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVIS----DLLCNRIDISQLV 908
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK+LT+ ++YA K Q+HV+
Sbjct: 909 ITKELTRAASDYAGK--QAHVE 928
Score = 34.3 bits (75), Expect = 2.3
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEG 473
GD VPY+I +A ++ + L EH L +D +YYL QL + RI EPI G
Sbjct: 945 GDRVPYVIISAAKGVAAYMKSE--DPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 1001
>UniRef50_P28340 Cluster: DNA polymerase delta catalytic subunit;
n=36; Eukaryota|Rep: DNA polymerase delta catalytic
subunit - Homo sapiens (Human)
Length = 1107
Score = 43.2 bits (97), Expect = 0.005
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL+ VR D L A L ++L ++ P+ + Q+ ++ DL+ N++ +S L
Sbjct: 827 KGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVIS----DLLCNRIDISQLV 882
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK+LT+ ++YA K Q+HV+
Sbjct: 883 ITKELTRAASDYAGK--QAHVE 902
Score = 34.3 bits (75), Expect = 2.3
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEG 473
GD VPY+I +A ++ + L EH L +D +YYL QL + RI EPI G
Sbjct: 919 GDRVPYVIISAAKGVAAYMKSE--DPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975
>UniRef50_A5UNA8 Cluster: DNA-directed DNA polymerase, family B,
PolB; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed DNA polymerase, family B, PolB -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 227
Score = 42.3 bits (95), Expect = 0.009
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 7 ARGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVL 186
A+GL++VR DW+ + + K +L IL E + +++ L +LK I K +
Sbjct: 63 AKGLELVRRDWAPIVKQTQKDVLKDILKEGNTTKAINTVKKVLKRLKTGKIEGKELIIHT 122
Query: 187 AITKQLTK----NPNEYADKHTQSH 249
ITK L++ P+ A K + H
Sbjct: 123 QITKPLSEYKQIGPHVVAAKKMEEH 147
>UniRef50_P52025 Cluster: DNA polymerase; n=6; Methanococcus|Rep:
DNA polymerase - Methanococcus voltae
Length = 824
Score = 42.3 bits (95), Expect = 0.009
Identities = 31/95 (32%), Positives = 51/95 (53%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL++VR DWS +A + + ++ +L + + + I+N ++ LK GN + + L
Sbjct: 666 KGLEVVRRDWSNIAKDTQQAVIRALLEDGDVNLAKKIIKNTIDNLKK---GN-IDKNDLL 721
Query: 190 ITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGDS 294
I QLTKN EY K T H++ +K GDS
Sbjct: 722 IHTQLTKNIEEY--KSTAPHIEV--AKKIKQRGDS 752
>UniRef50_O59610 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: Pho
pol intein (Pho Pol I intein)]; n=11; Archaea|Rep: DNA
polymerase (EC 2.7.7.7) [Contains: Pho pol intein (Pho
Pol I intein)] - Pyrococcus horikoshii
Length = 1235
Score = 41.9 bits (94), Expect = 0.011
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
RGL+IVR DWS +A E +L IL ++ ++ +++ KL + ++P L
Sbjct: 1067 RGLEIVRRDWSEIAKETQARVLEAILKHGNVEEAVKIVKDVTEKLTN----YEVPPEKLV 1122
Query: 190 ITKQLTKNPNEY 225
I +Q+T+ NEY
Sbjct: 1123 IYEQITRPINEY 1134
>UniRef50_P90829 Cluster: DNA polymerase delta catalytic subunit; n=8;
root|Rep: DNA polymerase delta catalytic subunit -
Caenorhabditis elegans
Length = 1081
Score = 41.9 bits (94), Expect = 0.011
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL+ VR D L A+ L ++L E+ L+ + ++ DL+ NK+ +S+L
Sbjct: 797 KGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTIS----DLLCNKIDISLLI 852
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
I+K+LTK+ ++Y K Q+HV+
Sbjct: 853 ISKELTKSGDKYQAK--QAHVE 872
Score = 32.3 bits (70), Expect = 9.3
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 473
GD VPY+ A +RA + + ++ +D K+YL +QL ++RI EPI G
Sbjct: 889 GDRVPYVFVAAAKNVPAYERAEDPTFVLQN-NIPLDTKHYLTNQLAKPLARIFEPILG 945
>UniRef50_Q9TX75 Cluster: DNA polymerase alpha, DNAPOL alpha; n=10;
Plasmodium|Rep: DNA polymerase alpha, DNAPOL alpha -
Plasmodium falciparum
Length = 1855
Score = 41.5 bits (93), Expect = 0.015
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPD----------DRLESIQNHLNKLKDDLI 159
+G++ ++ D+S ++ G +L I + + D D E I +L + +
Sbjct: 1319 KGINFIKRDFSKISKLIGNEVLRIIFTNRDVDSKNIPVPLENDLSEQIHEYLRTINQRIQ 1378
Query: 160 GNKMPLSVLAITKQLTKNPNEYADKHTQSHV 252
++ L ITK+LTKN +EY DK++ HV
Sbjct: 1379 NDEFDLDYYIITKKLTKNVHEYQDKNSLGHV 1409
Score = 39.9 bits (89), Expect = 0.046
Identities = 17/53 (32%), Positives = 33/53 (62%)
Frame = +3
Query: 351 TQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
+Q + I E+K +LK+D +YY+ +Q+ I+R+C+ IEG +++ C +
Sbjct: 1452 SQCCFSINEIKKY-NLKIDKEYYIRNQILSPINRLCQYIEGTSAEKLSSCFNI 1503
>UniRef50_UPI0000499E46 Cluster: DNA polymerase delta catalytic
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep: DNA
polymerase delta catalytic subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1077
Score = 40.3 bits (90), Expect = 0.035
Identities = 26/82 (31%), Positives = 47/82 (57%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G++ VR D L K+++ +L++ D +E + + + DL+ NK+ LS+L
Sbjct: 805 KGIETVRRDNCLLV----KYVIENVLNKILLDSDVEGAISFVKNMISDLLQNKLDLSMLI 860
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
I+K L+K +YA K Q+HV+
Sbjct: 861 ISKTLSK--EDYAGK--QAHVE 878
Score = 36.3 bits (80), Expect = 0.57
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 473
GD +PY+I + A ++A + L+N+ + +DF YY+ +QL ++RI +PI G
Sbjct: 895 GDRIPYVIIKSTKDAKAYEKAEDPLYVLENN--IPIDFDYYIENQLKKPLTRIFKPILG 951
>UniRef50_Q4Y991 Cluster: DNA polymerase; n=9; Plasmodium
(Vinckeia)|Rep: DNA polymerase - Plasmodium chabaudi
Length = 1674
Score = 39.1 bits (87), Expect = 0.081
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +3
Query: 363 YHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
+ I E+K +LK+D YY+ +Q+ I+R+CE IEG + +++ C +
Sbjct: 1309 FSISEIKKY-NLKIDKDYYIRNQILLPINRLCEYIEGTNVEKISSCFNI 1356
Score = 35.9 bits (79), Expect = 0.75
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 103 DDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHV 252
+D E I +L + + ++ L ITK+LTKN +EY +K++ HV
Sbjct: 1213 NDLSEQIHEYLRSIYHRIQNDEFDLEHYVITKKLTKNVHEYQEKNSLGHV 1262
>UniRef50_A7QST5 Cluster: Chromosome chr4 scaffold_162, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_162, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1126
Score = 38.7 bits (86), Expect = 0.11
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G++ VR D L K L +IL ++ ++ ++N + DL+ N+M LS+L
Sbjct: 853 KGIETVRRDNCLLVKNLVKECLHKILIDRDIPGAVQYVKNTIA----DLLMNRMDLSLLV 908
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK LTK ++Y K +HV+
Sbjct: 909 ITKGLTKTGDDYEVK--AAHVE 928
Score = 34.3 bits (75), Expect = 2.3
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 467
GD VPY+I + A +R+ I L+N+ + +D +YYL +Q+ + RI EPI
Sbjct: 945 GDRVPYVIIKAAKGAKAYERSEDPIYVLENN--IPIDPQYYLENQISKPLLRIFEPI 999
>UniRef50_A5KAH7 Cluster: DNA polymerase; n=1; Plasmodium vivax|Rep:
DNA polymerase - Plasmodium vivax
Length = 1707
Score = 38.7 bits (86), Expect = 0.11
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 103 DDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHV 252
+D E I +L + ++ ++ L ITK+LTKN +EY +K++ HV
Sbjct: 1270 NDLSEQIHEYLRGVHQRILADEFDLDFFTITKKLTKNVSEYQEKNSLGHV 1319
Score = 36.7 bits (81), Expect = 0.43
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 384 NSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
+ +L+VD YY+ +Q+ I+R+C+ IEG ++A C +
Sbjct: 1373 HKHNLRVDKDYYIRNQILSPINRLCQYIEGTSAEKLASCFNI 1414
>UniRef50_A7EFB8 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1430
Score = 38.7 bits (86), Expect = 0.11
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 455
G+ VPY++ R E+L NS+H ++D +YY++ L P + RI
Sbjct: 1220 GERVPYVVVTGAPGARLIDRCVAPEDLLNSDHSELDAEYYISKNLIPPLERI 1271
>UniRef50_P74918 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu)
[Contains: Endonuclease PI-TfuI (EC 3.1.-.-) (Tfu pol-1
intein); Endonuclease PI-TfuII (EC 3.1.-.-) (Tfu pol-2
intein)]; n=1; Thermococcus fumicolans|Rep: DNA
polymerase (EC 2.7.7.7) (Pol Tfu) [Contains: Endonuclease
PI-TfuI (EC 3.1.-.-) (Tfu pol-1 intein); Endonuclease
PI-TfuII (EC 3.1.-.-) (Tfu pol-2 intein)] - Thermococcus
fumicolans
Length = 1523
Score = 38.7 bits (86), Expect = 0.11
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +1
Query: 4 SARGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSV 183
+ RGL+IVR DWS +A E +L IL ++ + ++ KL ++P
Sbjct: 1353 TTRGLEIVRRDWSEVAKETQARVLEAILRHGDVEEAVRIVKEVTEKLSK----YEVPPEK 1408
Query: 184 LAITKQLTKNPNEYADKHTQSHV 252
L I +Q+T+ +Y K T HV
Sbjct: 1409 LVIHEQITRELKDY--KATGPHV 1429
>UniRef50_A2FME7 Cluster: DNA polymerase; n=1; Trichomonas vaginalis
G3|Rep: DNA polymerase - Trichomonas vaginalis G3
Length = 1378
Score = 37.9 bits (84), Expect = 0.19
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGN 165
+GLD+VR DW L F++S + + DD +E I N + ++ L N
Sbjct: 948 KGLDMVRRDWCFLTRYLSYFVISTFMFGENSDDSIEKILNEMERVAAMLRNN 999
Score = 33.5 bits (73), Expect = 4.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 405 DFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
D ++Y+ +Q+ + R+CEP GM+ +A LG+
Sbjct: 1126 DIEWYITNQIFNPVWRLCEPFGGMEKGMLAKALGV 1160
>UniRef50_A6DKJ0 Cluster: DNA polymerase II; n=1; Lentisphaera
araneosa HTCC2155|Rep: DNA polymerase II - Lentisphaera
araneosa HTCC2155
Length = 753
Score = 37.5 bits (83), Expect = 0.25
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 13 GLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAI 192
GL+ VR DW+ LA + +L +I ++++ D SI+ + +L +DL + +L
Sbjct: 612 GLEAVRRDWTELARQLQSDLLEKIFNQESAD----SIETFIQELINDLNQGSLD-HLLTY 666
Query: 193 TKQLTKNPNEYADKHTQSHVQ 255
K+LTK P E + T HV+
Sbjct: 667 RKRLTK-PLESYTRTTPPHVK 686
>UniRef50_Q9P6L6 Cluster: DNA polymerase; n=1; Schizosaccharomyces
pombe|Rep: DNA polymerase - Schizosaccharomyces pombe
(Fission yeast)
Length = 1480
Score = 37.1 bits (82), Expect = 0.33
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 255 VALRLNSKNSRRFKK-GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQ 431
+A RL +K+ RR + G+ VPY+I + R+ EE +S ++D YY+ +
Sbjct: 1268 MARRLMTKDPRREPQYGERVPYLIIAAAPGTTLANRSVAPEEFLSSSFSQLDINYYINNS 1327
Query: 432 LHPVISR 452
L P + R
Sbjct: 1328 LIPPLDR 1334
>UniRef50_Q0V5M4 Cluster: DNA polymerase; n=2; Pezizomycotina|Rep: DNA
polymerase - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1702
Score = 37.1 bits (82), Expect = 0.33
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 455
G+ VPYI+ R E L ++HL++D +YY++ L P + RI
Sbjct: 1462 GERVPYIVITGAPGARLIDRCVSPETLLQNDHLELDAEYYISKNLIPPLERI 1513
>UniRef50_O93745 Cluster: DNA polymerase 1; n=1; Aeropyrum pernix|Rep:
DNA polymerase 1 - Aeropyrum pernix
Length = 959
Score = 37.1 bits (82), Expect = 0.33
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +1
Query: 70 ILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSH 249
ILS++ + + L +++H+N + +++ L AI L+KNP EY DK+T H
Sbjct: 819 ILSKLEKPEDVEAILAELRDHINTVYNNVKKKVYTLDQFAIKVMLSKNPREY-DKNTPQH 877
Query: 250 VQ 255
V+
Sbjct: 878 VK 879
>UniRef50_A2DY14 Cluster: DNA polymerase; n=2; Trichomonas
vaginalis|Rep: DNA polymerase - Trichomonas vaginalis G3
Length = 1045
Score = 36.7 bits (81), Expect = 0.43
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 294 KKGDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIE 470
+ GD +P+++C+ G +++ I L++S + +D KYYL +QL ++R+ PI
Sbjct: 848 RMGDRIPFVMCDVGNGAKGYEKSEDPIWALEHS--IPIDTKYYLENQLSGPLNRLFGPII 905
Query: 471 GMDPAR 488
G + +
Sbjct: 906 GEEKVK 911
>UniRef50_Q2H423 Cluster: DNA polymerase; n=6; Pezizomycotina|Rep: DNA
polymerase - Chaetomium globosum (Soil fungus)
Length = 1755
Score = 36.3 bits (80), Expect = 0.57
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 455
G+ VPY++ R E+L N H +D +YY++ L P + RI
Sbjct: 1512 GERVPYVVVSGAPGARLIDRCVAPEDLLNDPHASLDAEYYISKNLIPPLERI 1563
>UniRef50_Q57YY4 Cluster: DNA polymerase zeta catalytic subunit,
putative; n=1; Trypanosoma brucei|Rep: DNA polymerase
zeta catalytic subunit, putative - Trypanosoma brucei
Length = 1958
Score = 35.9 bits (79), Expect = 0.75
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 240 AISRPVALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSE-HLKVDFKY 416
A +R AL + R G+ +P+++ + + R H ++L + E HL +D +Y
Sbjct: 1633 AAARLAALLVEKDAMRTPYWGERIPFVVIRRPESTRLSDRVVHPQQLLSDEDHLMLDSEY 1692
Query: 417 YLAHQLHPVISRI 455
Y+ + P + R+
Sbjct: 1693 YITRHIVPTLDRM 1705
>UniRef50_Q8SQP5 Cluster: DNA polymerase; n=1; Encephalitozoon
cuniculi|Rep: DNA polymerase - Encephalitozoon cuniculi
Length = 974
Score = 35.9 bits (79), Expect = 0.75
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 467
GD VPY+I +A +++ + L+N+ L +D +YY++ Q+ +SRI EPI
Sbjct: 796 GDRVPYVIVRKEKGAAAHEKSEDPVYVLENN--LPIDTEYYISQQISKPLSRIFEPI 850
>UniRef50_Q27RS8 Cluster: DNA polymerase; n=36; Neurospora|Rep: DNA
polymerase - Neurospora crassa
Length = 1926
Score = 35.1 bits (77), Expect = 1.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 455
G+ VPY++ R EEL N+ H +D YY+ + P + RI
Sbjct: 1572 GERVPYVVMAGAPGLRLVDRCVEPEELLNNAHATLDADYYINKNIIPPLERI 1623
>UniRef50_Q55Y13 Cluster: DNA polymerase; n=2; Filobasidiella
neoformans|Rep: DNA polymerase - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 1973
Score = 34.7 bits (76), Expect = 1.7
Identities = 30/99 (30%), Positives = 42/99 (42%)
Frame = +3
Query: 309 VPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPAR 488
VPY+I + RA EEL +S L +D +YY+ + L P +SRI + G D
Sbjct: 1764 VPYLI-SNADGRRLIDRARMPEELLSSRSLSIDAEYYIRNLLIPPLSRIFN-LVGADVEE 1821
Query: 489 VADCLGLIPPDTNKLLKEKPTTRKLMRSRTNKKSTDNAK 605
D + P T +L K K+ K AK
Sbjct: 1822 WYDNM----PKTKRLGKYDKAGGKMTNRGNGKGKQGEAK 1856
>UniRef50_A6R857 Cluster: DNA polymerase; n=1; Ajellomyces capsulatus
NAm1|Rep: DNA polymerase - Ajellomyces capsulatus NAm1
Length = 1086
Score = 34.7 bits (76), Expect = 1.7
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G++ VR D + + +L +IL ++ D Q+++ DL+ NK+ +S L
Sbjct: 806 KGIETVRRDNCRMVQTVIETVLRKILIDRDVD----GAQSYVKDTISDLLQNKIDMSKLV 861
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
ITK L+K +Y K Q+HV+
Sbjct: 862 ITKALSK--KDYTAK--QAHVE 879
Score = 33.5 bits (73), Expect = 4.0
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 473
GD V Y+I + + +++ I L+N+ + +D KYYL +QL ++RI EPI G
Sbjct: 896 GDRVAYVIVKGAGGSKNYEKSEDPIYVLENN--IPIDTKYYLDNQLAKPLTRIFEPILG 952
>UniRef50_Q1IJG7 Cluster: Alanyl-tRNA synthetase; n=3; cellular
organisms|Rep: Alanyl-tRNA synthetase - Acidobacteria
bacterium (strain Ellin345)
Length = 1098
Score = 33.9 bits (74), Expect = 3.0
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMD 479
G+I + +G+ +S +R + + H + D H+L V+S I P EG+
Sbjct: 892 GEIGLIKVLHEGSVSSGVRRLEAVTGENSVRHFRKD------HELEGVVSTIVRPSEGLS 945
Query: 480 PARVADC-LGLIPPDTNKLLKEKPTTRKLMRSRTNKKSTDNAK 605
PA+ L + KL KE +R S +T++A+
Sbjct: 946 PAQALKFELDRREEEIKKLRKELEQSRMKSASSAVSSATESAR 988
>UniRef50_Q22HL1 Cluster: DNA polymerase family B containing protein;
n=12; root|Rep: DNA polymerase family B containing
protein - Tetrahymena thermophila SB210
Length = 1124
Score = 33.9 bits (74), Expect = 3.0
Identities = 25/67 (37%), Positives = 31/67 (46%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G++ VR D E L IL E D SIQ + DL NK+ +S L
Sbjct: 819 KGMENVRRDNCQFIREMMNTCLRYILVEHKQDGVQRSIQ-FIKGCISDLYQNKVDISKLV 877
Query: 190 ITKQLTK 210
ITK LTK
Sbjct: 878 ITKSLTK 884
>UniRef50_A2DDR9 Cluster: DNA polymerase; n=1; Trichomonas vaginalis
G3|Rep: DNA polymerase - Trichomonas vaginalis G3
Length = 1367
Score = 33.9 bits (74), Expect = 3.0
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNK 141
+GLD+VR DW L F+L Q+++ DDR +++N L++
Sbjct: 922 KGLDMVRRDWCQLTKYLSSFVLDQMMNN---DDRSLTVRNCLSE 962
>UniRef50_A0DPB1 Cluster: Chromosome undetermined scaffold_59, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_59,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 341
Score = 33.9 bits (74), Expect = 3.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 264 RLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHP 440
++ +K S F+KGD + Y+I E+ ++ A +E KN + K++ +YY+ P
Sbjct: 140 KVKNKQSNTFQKGDRISYVIVENIPGQQLSENAQDPLEAFKN--NYKLNIQYYINQIKIP 197
Query: 441 VI 446
+I
Sbjct: 198 II 199
>UniRef50_Q5CWN2 Cluster: DNA polymerase; n=3; Cryptosporidium|Rep:
DNA polymerase - Cryptosporidium parvum Iowa II
Length = 1084
Score = 33.5 bits (73), Expect = 4.0
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G++ VR D L + +L +IL D +E+ + + + DL+ NK+ LS+L
Sbjct: 812 KGIETVRRDNCLLVQKVVDTVLKKILV----DKDVEAAKQYTRNVISDLLKNKIDLSLLV 867
Query: 190 ITKQLTKN 213
++K L K+
Sbjct: 868 VSKSLGKD 875
>UniRef50_Q7RK77 Cluster: Putative uncharacterized protein PY03026;
n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY03026 - Plasmodium yoelii yoelii
Length = 1481
Score = 33.1 bits (72), Expect = 5.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 91 EQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYA 228
+ TP + +E+++ + N KDD I MP I LT N E A
Sbjct: 595 DTTPTNNIENVEGNNNNFKDDNINGNMPNETQDIKITLTDNTEEEA 640
>UniRef50_A2E9P0 Cluster: DNA polymerase; n=1; Trichomonas vaginalis
G3|Rep: DNA polymerase - Trichomonas vaginalis G3
Length = 932
Score = 33.1 bits (72), Expect = 5.3
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 82 ILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHV 252
I+ ++T DD + ++ + K+ + +I PLS I KQL +N NEY K Q V
Sbjct: 739 IILQKTFDDGVNFVKEMMTKMYNGMI----PLSDFIIQKQLGQNINEYRTKTVQCEV 791
>UniRef50_P36056 Cluster: 37S ribosomal protein S22, mitochondrial
precursor; n=2; Saccharomyces cerevisiae|Rep: 37S
ribosomal protein S22, mitochondrial precursor -
Saccharomyces cerevisiae (Baker's yeast)
Length = 628
Score = 33.1 bits (72), Expect = 5.3
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 160 GNKMPLSVLAITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGDSKKATLCLTLYVK-ME 336
GN M ++A +Q+T P + D+ + W G+TV+ D++ + ++K +
Sbjct: 312 GNPMGFEIIARARQITLRPENFPDEFGKIPRPWSRGVTVRGKKDAELGNISSNYFLKVIA 371
Query: 337 PLTQPRK 357
P RK
Sbjct: 372 PCPHQRK 378
>UniRef50_Q9DSV8 Cluster: DNA polymerase; n=1; Diadromus pulchellus
ascovirus 4a|Rep: DNA polymerase - Diadromus pulchellus
ascovirus 4a
Length = 956
Score = 32.7 bits (71), Expect = 7.0
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 297 KGDIVPYIICED-GTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIE 470
+G + YI+ + T N+ T RA H E N VD+ YY++H + P+ I E I+
Sbjct: 894 EGARMEYIVLKKRNTKNNVTNRA-HNEYRNNRRVYDVDYMYYISHLVDPLEQIIFEYIQ 951
>UniRef50_A2Q6K4 Cluster: FruR protein; n=6; Actinobacteridae|Rep:
FruR protein - Bifidobacterium breve
Length = 297
Score = 32.7 bits (71), Expect = 7.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 444 ISRICEPIEGMDPARVADCLGLIPPDTNKLLKE 542
++R+ P +G DP +A LG IPP+ +L+ E
Sbjct: 43 VARVFVPAQGRDPDHMAQLLGDIPPEIIRLISE 75
>UniRef50_Q7QQB5 Cluster: DNA polymerase; n=2; Giardia
intestinalis|Rep: DNA polymerase - Giardia lamblia ATCC
50803
Length = 1730
Score = 32.7 bits (71), Expect = 7.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 402 VDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 509
+D ++Y+ Q+ P + R+C + + ++A+C GL
Sbjct: 1417 LDIEWYIKSQIIPPLQRVCSYVPDLSAGQLAECFGL 1452
>UniRef50_A0DEE6 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1069
Score = 32.7 bits (71), Expect = 7.0
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 94 QTPDDRLESIQNHLNKLKDDLIGNKMP-LSVLAITKQLTKNPNEYADKHTQSHVQWH 261
Q +D + ++++ +NKL DD++ N+ +S+ + +QL NE D+ Q H
Sbjct: 446 QKCNDNIRNLEDQINKLNDDIMNNRDEIMSLKSQNEQLNNKINELNDRAGQQQGDLH 502
>UniRef50_Q9C0H4 Cluster: B double prime 1; n=15; Eutheria|Rep: B
double prime 1 - Homo sapiens (Human)
Length = 2627
Score = 32.7 bits (71), Expect = 7.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 488 RCRLPRPDPSGYKQAVKRETNDSETYEVENEQE 586
R R RP P+ + A+KRET +SE Y E + E
Sbjct: 1438 RSRFKRPKPNLARAALKRETTESEKYIYEKKSE 1470
>UniRef50_Q8A3U4 Cluster: Sensor protein; n=3; Bacteroides
thetaiotaomicron|Rep: Sensor protein - Bacteroides
thetaiotaomicron
Length = 1337
Score = 32.3 bits (70), Expect = 9.3
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +3
Query: 354 QRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVAD-----CLGLIPP 518
Q+ + IE+ K KV+F +AH++ ++ I P+E + +AD L +I
Sbjct: 812 QKLFEIEKEKELYESKVNFFTEIAHEVRTPLTLINGPLETLQEMEIADPKIQKNLSVITQ 871
Query: 519 DTNKLL 536
+TN+LL
Sbjct: 872 NTNRLL 877
>UniRef50_Q4QAV6 Cluster: ATP-dependent RNA helicase, putative; n=2;
Leishmania|Rep: ATP-dependent RNA helicase, putative -
Leishmania major
Length = 605
Score = 32.3 bits (70), Expect = 9.3
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 237 YAISRPVALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSE 392
Y + P+ +RL++ RRF+ G +V ++C DGT SA Q +EE + E
Sbjct: 317 YDANLPINVRLDTL--RRFQSG-MVSTLVCTDGTLESAMQLQASLEEPQPGE 365
>UniRef50_P14284 Cluster: DNA polymerase zeta catalytic subunit; n=3;
Saccharomycetaceae|Rep: DNA polymerase zeta catalytic
subunit - Saccharomyces cerevisiae (Baker's yeast)
Length = 1504
Score = 32.3 bits (70), Expect = 9.3
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
V R+N + + + +PY++ + +R EE E+L++D +YY+ L
Sbjct: 1292 VKRRINEDHRAEPQYKERIPYLVVKGKQGQLLRERCVSPEEFLEGENLELDSEYYINKIL 1351
Query: 435 HPVISRI 455
P + R+
Sbjct: 1352 IPPLDRL 1358
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,835,321
Number of Sequences: 1657284
Number of extensions: 11335500
Number of successful extensions: 33708
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 32499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33674
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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