Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0006
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 85 4e-17
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436... 39 0.004
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 32 0.31
12_01_0814 - 7483597-7483818,7484136-7484276,7484370-7484444,748... 29 2.2
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 29 2.9
01_04_0120 + 16242220-16242483,16242538-16243424,16244604-162452... 29 3.8
02_02_0265 - 8405936-8406367,8406488-8406940,8407073-8407335,840... 28 6.7
>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 85.0 bits (201), Expect = 4e-17
Identities = 44/91 (48%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSA-----TQRAYHIEELK-NSEHLKVDFKY 416
VALRL GD VPYIIC + S QRA H EELK N + +D Y
Sbjct: 1253 VALRLKQNGYSGCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDY 1312
Query: 417 YLAHQLHPVISRICEPIEGMDPARVADCLGL 509
YL+ Q+HPV+SR+C I+G PAR+A+CLGL
Sbjct: 1313 YLSQQIHPVVSRLCASIQGTSPARLAECLGL 1343
Score = 74.5 bits (175), Expect = 6e-14
Identities = 37/81 (45%), Positives = 51/81 (62%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GLD+VR DWS L+ E G F L+QILS + DD +ESI + L ++++ + G + L
Sbjct: 1173 KGLDMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYI 1232
Query: 190 ITKQLTKNPNEYADKHTQSHV 252
ITK LTK P +Y D Q HV
Sbjct: 1233 ITKSLTKAPEDYPDAKNQPHV 1253
>11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,
4369000-4369160,4369233-4369322,4369406-4369480,
4369569-4369640,4369719-4369891,4369964-4370078,
4370274-4370387,4370582-4370661,4370755-4370842,
4370941-4370997,4371111-4371176,4371254-4371349,
4371459-4371566,4371941-4372039,4372108-4372227,
4372399-4372437,4372940-4373026,4373276-4373347,
4373443-4373509,4374455-4374546,4374631-4374708,
4374785-4374922,4375029-4375164,4375306-4375468,
4375690-4375849,4375950-4376056,4376149-4376259,
4377850-4378159
Length = 1107
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+G++ VR D L L +IL ++ ++ ++N ++ DL+ N++ LS+L
Sbjct: 834 KGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTIS----DLLMNRVDLSLLV 889
Query: 190 ITKQLTKNPNEYADK--HTQ--SHVQWH*GLTVKTVGD 291
ITK LTK +YA K H + ++ T TVGD
Sbjct: 890 ITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGD 927
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 467
GD VPY+I + A +R+ I L N+ + +D +YYL +Q+ + RI EPI
Sbjct: 926 GDRVPYVIIKAAKGAKAYERSEDPIYVLDNN--IPIDPQYYLENQISKPLLRIFEPI 980
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 449 KNMRTNRRHGSSPRCRLPRPDPSGYKQAVKRETNDSETYEVENEQE 586
K + TN+ +GS P +P+P G K+ V+ E N + E NE+E
Sbjct: 517 KGISTNQENGSKPAFSIPKPQWLGDKRTVESEENCIKE-ESANEEE 561
>12_01_0814 -
7483597-7483818,7484136-7484276,7484370-7484444,
7484706-7484882,7485530-7485685,7485781-7485864,
7486589-7486661,7487744-7487946,7488046-7488124,
7488326-7488464,7488559-7488646
Length = 478
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +1
Query: 106 DRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSH-VQWH*GLTVKT 282
D L I N L+ + S L Y DKH ++H + H GL +K
Sbjct: 318 DALSRITGSFNSSNSRLLEKAIQRSFLVSADMAHALHPNYMDKHEENHQPKLHGGLVIKH 377
Query: 283 VGDSKKATLCLTLYVKME 336
+ + AT +T ++ E
Sbjct: 378 NANQRYATNAVTAFIFRE 395
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 351 TQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVAD 497
T + H+ ++K H+ ++F QL+ ++S I +EG PA +AD
Sbjct: 216 TDKETHMFDVKAWVHVSMEF------QLNKIVSGIISHVEGSTPANIAD 258
>01_04_0120 +
16242220-16242483,16242538-16243424,16244604-16245264,
16245582-16245943,16246071-16246140,16246666-16246740
Length = 772
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 443 NIKNMRTNRRHGSSPRCRLPRPDPSGYKQAVKRETNDSETYEVENEQEK 589
+I+N++ G C P P+P+G + +ET+ +++ + E + EK
Sbjct: 204 SIENVKAITTRGGKSTCDPPYPNPAG-TNGMPKETSSTDSADKEIQPEK 251
>02_02_0265 -
8405936-8406367,8406488-8406940,8407073-8407335,
8407445-8407751
Length = 484
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 470 RHGSSPRCRLPRPDPSGYKQAVKRETNDSETYEVENEQ 583
R G+S +CR R + V+ E D+E ++ NEQ
Sbjct: 31 RQGASRQCRFDRLQAFEPLRKVRSEAGDTEYFDERNEQ 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,818
Number of Sequences: 37544
Number of extensions: 310547
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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