Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0006
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical... 102 2e-22
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical pr... 29 2.0
U97002-10|AAB52266.1| 322|Caenorhabditis elegans Hypothetical p... 29 2.0
Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical pr... 29 2.6
U50309-6|AAG24134.1| 247|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 29 3.4
Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical ... 28 4.5
AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 28 4.5
U50066-1|AAA93437.2| 378|Caenorhabditis elegans Resistance to i... 28 6.0
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 27 7.9
U29379-4|AAF99980.2| 415|Caenorhabditis elegans Hypothetical pr... 27 7.9
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 27 7.9
>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
protein Y47D3A.29 protein.
Length = 1428
Score = 102 bits (244), Expect = 2e-22
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +3
Query: 255 VALRLNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQL 434
VA RLN + DIV Y+ICEDGT N ATQRAYH E+ + LK+D YYLA Q+
Sbjct: 1122 VAQRLNKSGKFNLRHNDIVEYVICEDGTDNPATQRAYHRTEMAENSALKIDLLYYLAQQI 1181
Query: 435 HPVISRICEPIEGMDPARVADCLGL 509
HPV+SR+ EPIE D R+A+ LGL
Sbjct: 1182 HPVVSRLVEPIEETDAVRIAENLGL 1206
Score = 71.3 bits (167), Expect = 5e-13
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQ-TPDDRLESIQNHLNKLKDDLIGNKMPLSVL 186
+GLDIVR DWS LA E G ++ +IL T D+ + SI + L +++ L +PL +
Sbjct: 1039 KGLDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAKLDSGTVPLEMF 1098
Query: 187 AITKQLTKNPNEYADKHTQSH 249
I+KQLT+NP +YAD Q H
Sbjct: 1099 QISKQLTRNPEQYADVKAQCH 1119
>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical protein
F10C2.4 protein.
Length = 1081
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = +1
Query: 10 RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
+GL+ VR D L A+ L ++L E+ L+ + ++ DL+ NK+ +S+L
Sbjct: 797 KGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTIS----DLLCNKIDISLLI 852
Query: 190 ITKQLTKNPNEYADKHTQSHVQ 255
I+K+LTK+ ++Y K Q+HV+
Sbjct: 853 ISKELTKSGDKYQAK--QAHVE 872
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 300 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 473
GD VPY+ A +RA + + ++ +D K+YL +QL ++RI EPI G
Sbjct: 889 GDRVPYVFVAAAKNVPAYERAEDPTFVLQN-NIPLDTKHYLTNQLAKPLARIFEPILG 945
>Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical
protein K08F4.5 protein.
Length = 215
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 356 KGLPHRRIKEFRTSQSRF*VLSSTSATSCNIKNMRTNRRHGSSPRCRLPRPDPSGYKQAV 535
KG +++ KE +T ++ +T+ N+ P+ ++P K A
Sbjct: 30 KGAKNKK-KEDKTKAMSAIKTTTMGSTTANMHPAEPVVEKKEEPKEKVPEKKEEEKKDAT 88
Query: 536 KRETNDSETYEVENEQEKYRQCKE 607
K+E E E E ++EK + KE
Sbjct: 89 KKEEAKEEKKEEERKEEKKEESKE 112
>U97002-10|AAB52266.1| 322|Caenorhabditis elegans Hypothetical
protein K09H11.7 protein.
Length = 322
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 426 HQLHPVISRICEPIEGMDPARVADCLGLIPPDTNKL 533
HQ+ +I + M P VA CLG + P++N++
Sbjct: 285 HQIEDIIENQMNERDDMVPDYVAPCLGALVPESNQI 320
>Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical
protein W02D9.3 protein.
Length = 386
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 380 KEFRTSQSRF*VLSSTSATSCNIKNMRTNRRHGSSPRCRLPRPDPS 517
KEF+ +++F LSS S S N K R +P ++P P PS
Sbjct: 199 KEFQKKRAKF--LSSQSNGSKNAKKRRQADSDDDTPNVQIPFPKPS 242
>U50309-6|AAG24134.1| 247|Caenorhabditis elegans Hypothetical
protein F58G4.3 protein.
Length = 247
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 112 LESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNE 222
L+ + +LNKL+DDL+GN L V +T + K P E
Sbjct: 78 LKVLDLNLNKLQDDLLGNSSAL-VGLLTNFIGKIPEE 113
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = +3
Query: 297 KGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 467
+G+ VPY+I + T ++ I++ + K++ YYL + + R+ + I
Sbjct: 971 RGERVPYVIIDGVTGSTVYSCVRSIDQFARNPEYKINTFYYLNAHILAALRRVTDLI 1027
>Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical
protein F59B2.5 protein.
Length = 468
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 360 AYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGLIPPDTNKLLK 539
A H EL + + V + + L ISR+ EP ++ + +A +G+ P + +
Sbjct: 353 AEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVPPVERAIA 412
Query: 540 EKPTTRKLMRS 572
+KLM S
Sbjct: 413 RMILDKKLMGS 423
>AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical
protein W10D9.4 protein.
Length = 403
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 PLSVLAITKQLTKNPNEYADKHTQ-SHVQWH 261
P+S ++ +++ +NP+ YA +H SHV+ H
Sbjct: 330 PVSSSSVMRKIGQNPSSYAQQHHHVSHVEQH 360
>AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna
binding factor protein 1 protein.
Length = 614
Score = 28.3 bits (60), Expect = 4.5
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 321 ICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI-CEPIEGMDPARVAD 497
IC D AN Q+ + LKN E + VDF H + C ++ + AD
Sbjct: 316 ICVDQNANHVIQKVVAVIPLKNWEFI-VDFVATPEHLRQICFDKYGCRVVQTIIEKLTAD 374
Query: 498 CLGLIPPDTNKLLKEKPTTRKLMRSRTNK 584
+ + + L+E+ ++LM S TN+
Sbjct: 375 SINVDLTSAAQHLRER-ALQRLMTSVTNR 402
>U50066-1|AAA93437.2| 378|Caenorhabditis elegans Resistance to
inhibitors of cholinesteraseprotein 3 protein.
Length = 378
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 494 RLPRPDPSGYKQAVKRETNDSETYEVENEQEKYRQCKE 607
+L R D S + E N SE E+E E+E+ + K+
Sbjct: 273 KLKRKDSSSDEDEEDEEENSSELSEIEEEEEEVKPVKK 310
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 524 KQAVKRETNDSETYEVENEQEKYRQ 598
KQ ++RE+ DSE E E E+E Y +
Sbjct: 256 KQMIERESVDSEISEEEEEEEIYNK 280
>U29379-4|AAF99980.2| 415|Caenorhabditis elegans Hypothetical
protein K05B2.4 protein.
Length = 415
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 402 VDFKYYLAHQLHPVISRI 455
VDFKY L +HP++ RI
Sbjct: 100 VDFKYQLLRLMHPLVERI 117
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 27.5 bits (58), Expect = 7.9
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +3
Query: 321 ICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI--CEPIEGMDPARVA 494
IC D AN Q+ + LKN E + VDF H L + S C ++ + A
Sbjct: 318 ICVDQNANHVIQKVVAVIPLKNWEFI-VDFVATPEH-LRQICSDKYGCRVVQTIIEKLTA 375
Query: 495 DCLGLIPPDTNKLLKEKPTTRKLMRSRTNK 584
D + + + L+E+ ++LM S TN+
Sbjct: 376 DSMNVDLTSAAQNLRER-ALQRLMTSVTNR 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,605
Number of Sequences: 27780
Number of extensions: 276682
Number of successful extensions: 850
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -