Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0004
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 112 4e-26
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 86 3e-18
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 4.8
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 6.3
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 6.3
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.3
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 6.3
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 8.4
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 8.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.4
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 112 bits (269), Expect = 4e-26
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +3
Query: 258 GKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPF 437
GKI IG+DVA+SEF+ DGKYDLD K P + L+ +L D+Y++ K +P+VSIEDPF
Sbjct: 239 GKIKIGLDVASSEFYVDGKYDLDIKAAKPKPENKLTYQQLTDLYVELSKKYPIVSIEDPF 298
Query: 438 DQDDWSAWANLTGRTPIQIVGDDL 509
DQDDWSAW ++ T QIVGDDL
Sbjct: 299 DQDDWSAWTHMKAETDFQIVGDDL 322
Score = 93.1 bits (221), Expect = 3e-20
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = +1
Query: 34 LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKD 213
LA QEFMI PTGA +FSEAMR G+E YH LK I K+++G + VGDEGG AP++Q ++
Sbjct: 164 LAFQEFMILPTGAPSFSEAMRWGAETYHTLKSIAKKRYGSSAGNVGDEGGIAPDLQTPQE 223
Query: 214 ALYLIQDAIQKAG 252
AL LI +AI KAG
Sbjct: 224 ALDLIVEAINKAG 236
Score = 46.4 bits (105), Expect = 3e-06
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +2
Query: 509 TVTNPKRIATAVEKKACNCLLLKVNQIGS 595
TVTN KR+ TA++KK N LLLKVNQIGS
Sbjct: 323 TVTNVKRLRTAIDKKCANALLLKVNQIGS 351
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 86.2 bits (204), Expect = 3e-18
Identities = 40/73 (54%), Positives = 53/73 (72%)
Frame = +1
Query: 34 LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKD 213
LA QEFMI P A TFSE +R GSEVYH LK + K+K+G + VGDEGG AP++ ++
Sbjct: 165 LAFQEFMIMPIKAPTFSEGLRWGSEVYHTLKALAKKKYGASAGNVGDEGGIAPDLTTAEE 224
Query: 214 ALYLIQDAIQKAG 252
AL L+ +AI++AG
Sbjct: 225 ALDLVNEAIKEAG 237
Score = 85.4 bits (202), Expect = 6e-18
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +3
Query: 243 ESWLAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVS 422
E+ GK+ IG DVAASE + YDLDFK+ P + L KL + Y I+ +P+V
Sbjct: 235 EAGYDGKVKIGFDVAASELYNGKLYDLDFKSEHPKPENKLDYKKLYEKYSALIEKYPIVF 294
Query: 423 IEDPFDQDDWSAWANLTGRTPIQIVGDDL 509
IEDPF ++DW A++ ++ +T ++++ DDL
Sbjct: 295 IEDPFSEEDWGAFSYMSSKTKVEVIADDL 323
Score = 41.5 bits (93), Expect = 9e-05
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +2
Query: 509 TVTNPKRIATAVEKKACNCLLLKVNQIGS 595
TVTN KR++ A+E K N LL+K+NQIGS
Sbjct: 324 TVTNVKRLSKAIELKCANALLVKINQIGS 352
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 213 ILVVLYVWSETTFITNSRRVQSKLLLNDLFQMVVHF*THPHGFT 82
++ V +++S+TT I + + K L+NDL ++ FT
Sbjct: 551 LITVCHIFSDTTLIKPVKELFQKYLVNDLPSSILKLGPQSPAFT 594
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 15/54 (27%)
Frame = +3
Query: 336 PDSNPG-----DYLSSDKLADVYLDFIKDFPM------VSIE----DPFDQDDW 452
P+++PG D L SD+LA++YL K M VS++ +P D D W
Sbjct: 154 PETDPGNMETTDPLFSDELAEIYLSIHKCMDMRHKYIRVSLQGELDNPIDDDSW 207
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 258 GKIDIG-MDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDP 434
G++D G + + A+E+F +L+ N D ++ L FIK+ + + D
Sbjct: 841 GQLDYGKLTLPANEYFDTIASNLNSPNADVMKAAAIALGSLTSQSEKFIKELCALYVSDA 900
Query: 435 FDQD 446
+D++
Sbjct: 901 YDKE 904
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +3
Query: 234 CYPESWLAGKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFP 413
C P S + + I +++A+ FKD ++F+ S + + AD+ D + FP
Sbjct: 163 CVPYSCFSNQQPIYIEIASQAIFKD--RSINFELAISQSQHSIRAMSAADI--DTLHAFP 218
Query: 414 MVSIEDPFDQDDW 452
+ +E ++ W
Sbjct: 219 ALHVEHQTPENLW 231
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 301 KNSEAATSMPMSILPASQLSG*HPESDKEH 212
++S+ + + I P SQLS HP S + H
Sbjct: 184 RDSQNSLEIAPLISPESQLSSLHPSSSRRH 213
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 315 YDLDFKNPDSNPGDYLSSDKLA 380
YD +NP +P ++LSS K A
Sbjct: 229 YDFSSENPSIHPSNHLSSQKNA 250
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -3
Query: 231 LNQIKSILVVLYVWSETTFITNSRRVQSKLLLNDLFQMVV 112
LNQ K +L LY+W + ++ ++Q LL+N L ++++
Sbjct: 443 LNQ-KDVLR-LYLWKKLRSYKSTMKIQKSLLVNWLLELML 480
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 300 FKDGKYDLDFKNPDSNPGDYLSS---DKLADVYLD-FIKDFP 413
+++ K DLDF NPGD K V+ + F++ FP
Sbjct: 2159 YQEIKVDLDFALRSPNPGDIFEKKILPKFPPVFYEWFVESFP 2200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,370
Number of Sequences: 5004
Number of extensions: 56231
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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