Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0004
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 122 3e-28
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 113 1e-25
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 109 1e-24
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 109 2e-24
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 83 2e-16
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 122 bits (293), Expect = 3e-28
Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 AGKIDIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIED 431
+GKI IGMDVAASEF KDG YDL+FKN ++ LS+ +L D+Y +F+KDFP+VSIED
Sbjct: 284 SGKIKIGMDVAASEFLTKDGSYDLNFKNQPNDGAHVLSAQRLCDLYKEFVKDFPIVSIED 343
Query: 432 PFDQDDWSAWANLTGRTPIQIVGDDL 509
PFDQDDWS+WA+L IQIVGDDL
Sbjct: 344 PFDQDDWSSWASLQSSVNIQIVGDDL 369
Score = 113 bits (271), Expect = 1e-25
Identities = 51/73 (69%), Positives = 62/73 (84%)
Frame = +1
Query: 34 LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKD 213
LAMQEFM+ P GAS+FSEA+RMGSEVYH LK IIK K+G D+ VGDEGGFAPN+Q+N++
Sbjct: 210 LAMQEFMLLPVGASSFSEALRMGSEVYHALKGIIKAKYGQDACNVGDEGGFAPNVQDNRE 269
Query: 214 ALYLIQDAIQKAG 252
L L+ DAI+KAG
Sbjct: 270 GLVLLMDAIEKAG 282
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +2
Query: 512 VTNPKRIATAVEKKACNCLLLKVNQIGS 595
VTNPKRIA A+ KKACN LLLKVNQIG+
Sbjct: 371 VTNPKRIAEAIGKKACNALLLKVNQIGT 398
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 113 bits (272), Expect = 1e-25
Identities = 52/72 (72%), Positives = 61/72 (84%)
Frame = +1
Query: 37 AMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDA 216
A+QEFMI PTGAS+F EAM+MG EVYHHLK IIK+K+G D+T VGDEGGFAPNIQ NK+
Sbjct: 199 AVQEFMILPTGASSFKEAMKMGVEVYHHLKSIIKKKYGQDATNVGDEGGFAPNIQENKEG 258
Query: 217 LYLIQDAIQKAG 252
L L++ AI KAG
Sbjct: 259 LELLKAAIAKAG 270
Score = 102 bits (244), Expect = 2e-22
Identities = 52/89 (58%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
Frame = +3
Query: 258 GKIDIGMDVAASEFF--KDGKYDLDFKNPDSNPGDY-LSSDKLADVYLDFIKDFPMVSIE 428
GK+ IGMDVAASEF+ KD YDL+FK D+N G + +S D L DVY F+ ++P+VSIE
Sbjct: 273 GKVVIGMDVAASEFYSEKDKTYDLNFKE-DNNDGSHKISGDSLKDVYKSFVSEYPIVSIE 331
Query: 429 DPFDQDDWSAWANLTGR--TPIQIVGDDL 509
DPFDQDDW+ +A LT +QIVGDDL
Sbjct: 332 DPFDQDDWATYAKLTDEIGQQVQIVGDDL 360
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +2
Query: 512 VTNPKRIATAVEKKACNCLLLKVNQIGS 595
VTNP R+A A+ +K CN LLLKVNQIGS
Sbjct: 362 VTNPTRVAKAISEKTCNALLLKVNQIGS 389
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 109 bits (263), Expect = 1e-24
Identities = 49/70 (70%), Positives = 60/70 (85%)
Frame = +1
Query: 43 QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDALY 222
QEFMI PTGAS+F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAPNIQ NK+ L
Sbjct: 138 QEFMILPTGASSFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 197
Query: 223 LIQDAIQKAG 252
L++ AI+KAG
Sbjct: 198 LLKTAIEKAG 207
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Frame = +3
Query: 258 GKIDIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDP 434
GK+ IGMDVAASEF+ +D YDL+FK +++ +S D L +VY F+ ++P+VSIEDP
Sbjct: 210 GKVVIGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDP 269
Query: 435 FDQDDWSAWANLTGR--TPIQIVGDDL 509
FDQDDW +A +T +QIVGDDL
Sbjct: 270 FDQDDWVHYAKMTEEIGDQVQIVGDDL 296
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +2
Query: 524 KRIATAVEKKACNCLLLKVNQIGS 595
+R+A A++ KACN LLLKVNQIGS
Sbjct: 316 QRVAKAIKDKACNALLLKVNQIGS 339
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 109 bits (262), Expect = 2e-24
Identities = 51/74 (68%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 LAMQ-EFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNK 210
LAMQ EFMI PTGA++F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAPNIQ NK
Sbjct: 169 LAMQAEFMILPTGAASFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENK 228
Query: 211 DALYLIQDAIQKAG 252
+ L L++ AI+KAG
Sbjct: 229 EGLELLKTAIEKAG 242
Score = 98.7 bits (235), Expect = 3e-21
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Frame = +3
Query: 258 GKIDIGMDVAASEFF--KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIED 431
GK+ IGMDVAASEF+ KD YDL+FK +++ +S D L +VY F+ ++P+VSIED
Sbjct: 245 GKVVIGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIED 304
Query: 432 PFDQDDWSAWANLTGR--TPIQIVGDDL 509
PFDQDDW +A +T +QIVGDDL
Sbjct: 305 PFDQDDWEHYAKMTAEIGEQVQIVGDDL 332
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +2
Query: 512 VTNPKRIATAVEKKACNCLLLKVNQIGS 595
VTNP R+A A+++K+CN LLLKVNQIGS
Sbjct: 334 VTNPTRVAKAIQEKSCNALLLKVNQIGS 361
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 34 LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKD 213
L +QE MI P GA F EAM+MGSE YHHLK II EK+G +S +GD+GGFAPNI +
Sbjct: 205 LPIQEIMILPVGAKNFEEAMQMGSETYHHLKDIILEKYGSNSCNIGDDGGFAPNISRQWN 264
Query: 214 -ALYLIQDAIQKAG*LARSTL 273
A+ A+ + R+TL
Sbjct: 265 YAIQYCWSAVNLMAYINRTTL 285
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/66 (39%), Positives = 40/66 (60%)
Frame = +3
Query: 312 KYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQ 491
KYD++FK + + + ++D L ++Y ++P+VSIE PFD+DDW T Q
Sbjct: 305 KYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQ 364
Query: 492 IVGDDL 509
+VGDDL
Sbjct: 365 VVGDDL 370
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 512 VTNPKRIATAVEKKACNCLLLKVNQIGS 595
+++P+RI AV + CN L+LK NQ+G+
Sbjct: 372 MSDPERIKRAVNEYTCNALVLKANQVGT 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,843,243
Number of Sequences: 37544
Number of extensions: 384255
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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