Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0001
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 63 2e-10
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 47 1e-05
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 39 0.004
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 37 0.017
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.28
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 32 0.49
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 31 0.65
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 31 0.65
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 31 1.1
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 30 1.5
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.0
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 8.0
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
+VY+GN+G NASK EIE+ F +G +R+VWVARNPPGFA
Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFA 41
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 263 FEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
FED RDAED+VR LDG CG R RVE++ G
Sbjct: 45 FEDRRDAEDAVRELDGRYICGQRARVELAKG 75
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
KVY+G+LG NASK EIE F YG +++VWVARNPPGFA
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFA 71
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +2
Query: 263 FEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
F+D RDAED+VR LDG CG R+RVE++ G
Sbjct: 75 FDDRRDAEDAVRELDGRYICGQRVRVELAKG 105
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
++ K+YVGNLG NA E+E+ F K+G + VWVARNPPGFA
Sbjct: 2 MTTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFA 43
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSN 352
VE+ED RDAE++VR LDG C IRVE SN
Sbjct: 45 VEYEDYRDAEEAVRELDGANVCDRTIRVEFSN 76
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEFEDPRDAED+V+G DG G RIRVE G
Sbjct: 305 VEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPRG 337
Score = 34.7 bits (76), Expect = 0.070
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 135 CKVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
C+VYVGNL + + ++ IF KYG+I +V
Sbjct: 261 CRVYVGNLPQDVREKDLHDIFYKYGHIADV 290
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEF+D RDAED+V L+G G R+ VE S G
Sbjct: 727 VEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKG 759
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 254 IVEFEDPRDAEDSVRGLDGTRCCGTRIRV 340
+VEFE D ++ LD T G RIRV
Sbjct: 838 VVEFESKDDLNTAIEKLDDTELGGRRIRV 866
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEFED RDA+D+V +G G RI VE S G
Sbjct: 41 VEFEDDRDADDAVYECNGKEMLGERILVEHSRG 73
Score = 31.9 bits (69), Expect = 0.49
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
++C+VY+G L ++ ++ + F YG +R++ + N
Sbjct: 1 MNCRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN 37
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAL*NSK 269
L+ VYVGNL + YE++++FS+YG+I V + G+A N++
Sbjct: 613 LNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFINAR 658
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVE 343
+E+EDPRDAE+++R + + G+RI VE
Sbjct: 44 IEYEDPRDAEEAMRRENNRKLFGSRIVVE 72
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 93 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 215
+ +S+Y+ CKV+VGN+G E++ F +G++
Sbjct: 65 VSKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYFGDV 105
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +3
Query: 93 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
I+ +M++ +E D + +Y+ NL N + +E +FSKYG + + + R+
Sbjct: 166 IQAQMAKQQEQDPT-NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRD 213
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
++V NL +A + EIE++FSK+G ++ V + N G
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAG 208
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 31.9 bits (69), Expect = 0.49
Identities = 10/28 (35%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +3
Query: 135 CKVYVGNLGTN-ASKYEIEKIFSKYGNI 215
C++++GNL T+ ++ ++E+IFS++G +
Sbjct: 46 CRIFIGNLATDKIARQDLEEIFSRHGKV 73
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
VYVGNL + + ++ K+F +YG + V + R+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRD 44
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
V+VGNL K ++K FSKYG + +V
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
K+YV +L N +K +++IFS YG ++ V
Sbjct: 1158 KLYVAHLTRNVNKDHVQEIFSVYGRVKTV 1186
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 132 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
S +V++GNL + ++ ++FSKYG I +
Sbjct: 356 SHQVFIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 339 TRILVPQQRVPSSPRTESSASRGSSNSTMQIRADFELPIRY 217
T +L+P P+S T ++S S NST + +D P Y
Sbjct: 451 TPVLLPPTSTPTSDPTSPASSLVSRNSTRSLESDISSPSEY 491
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 72 NFYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
N Y S+ + +R + D K++VG L +K +++ FSKYG + V
Sbjct: 8 NGYIGTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGV 58
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYG 209
K+Y+GNL N+ + EIE+ F ++G
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG 33
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 90 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
+++T + R L C+VYVG++ + I F +G I + ++ +P
Sbjct: 87 ALQTAAQKQRALALMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDP 137
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 227 GSSKSARICIVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMS 349
GSSK C V +EDP A ++ +G G I+VE++
Sbjct: 215 GSSKGE--CTVTYEDPPTASAAIEWFNGKDFMGQSIKVELA 253
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTR 331
VEF+D RDA+D V L+G G R
Sbjct: 43 VEFDDYRDADDCVYDLNGRNLLGER 67
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 254 IVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
+VEF D + +++ LD T G RIR+++ +G
Sbjct: 152 VVEFATKDDMKTALKKLDDTEFFGKRIRLKIKDG 185
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 99 TKMSRYREWDLS----CKVYVGNLGTNASKYEIEKIFSKY 206
+++ +Y +DL CK Y+GNL ++ +++ FS+Y
Sbjct: 214 SRLLKYSYFDLKMGEECKCYIGNLDFKVNEADLQDRFSRY 253
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
++VGNL N + +I K F++YG + +V
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV 230
++V N+ A + +I ++FS YG I+N+ V
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHV 324
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,102,854
Number of Sequences: 59808
Number of extensions: 365672
Number of successful extensions: 1040
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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