Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0001
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 59 2e-09
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 59 2e-09
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 59 2e-09
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 45 4e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 45 4e-05
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 36 0.020
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 35 0.061
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 35 0.061
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 35 0.061
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 34 0.11
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 33 0.19
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 33 0.25
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 33 0.25
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 33 0.25
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 31 0.57
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 31 0.57
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 0.57
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 31 0.57
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 1.00
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 29 2.3
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 2.3
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 2.3
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 2.3
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 3.0
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 3.0
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 3.0
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 3.0
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 29 3.0
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 29 3.0
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 3.0
Z80344-3|CAB02488.2| 491|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 28 5.3
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 28 5.3
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 5.3
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 7.0
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 7.0
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 28 7.0
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 27 9.3
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF016451-12|AAB65994.1| 317|Caenorhabditis elegans Hypothetical... 27 9.3
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFA
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFA 42
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VE++D RDAED+VR LDG+R CG R RVE+S G
Sbjct: 44 VEYDDVRDAEDAVRALDGSRICGVRARVELSTG 76
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFA
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFA 42
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VE++D RDAED+VR LDG+R CG R RVE+S G
Sbjct: 44 VEYDDVRDAEDAVRALDGSRICGVRARVELSTG 76
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFA
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFA 42
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VE++D RDAED+VR LDG+R CG R RVE+S G
Sbjct: 44 VEYDDVRDAEDAVRALDGSRICGVRARVELSTG 76
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = +2
Query: 230 SSKSARICIVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
S + VEFED RDAED+VR DG G RIRVE + G
Sbjct: 42 SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRG 83
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFA 254
KVYVGNL + + E+E IF KYG I+ V + + P FA
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFA 49
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = +2
Query: 230 SSKSARICIVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
S + VEFED RDAED+VR DG G RIRVE + G
Sbjct: 42 SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRG 83
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFA 254
KVYVGNL + + E+E IF KYG I+ V + + P FA
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFA 49
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 11/58 (18%)
Frame = +3
Query: 138 KVYVGNLGTNASKYE-----------IEKIFSKYGNIRNVWVARNPPGFAL*NSKTPV 278
+VYVGN+ +A++ E IE +FS G I+++W+A+ PPGFA K V
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTV 75
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVE 343
V+F+D RDA+D+V L+G CG R+ +E
Sbjct: 40 VDFQDQRDADDAVHDLNGKELCGERVILE 68
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF 251
+VY+G L AS ++E F YG + +V + +N GF
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKNGFGF 39
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 34.7 bits (76), Expect = 0.061
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIR--VEMSNG 355
V+FED RDAED+ LDG G+ +R VEM+ G
Sbjct: 40 VDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARG 74
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
++Y+G + NA + ++E+ YG I N+
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 34.7 bits (76), Expect = 0.061
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIR--VEMSNG 355
V+FED RDAED+ LDG G+ +R VEM+ G
Sbjct: 40 VDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARG 74
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
++Y+G + NA + ++E+ YG I N+
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 34.7 bits (76), Expect = 0.061
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIR--VEMSNG 355
V+FED RDAED+ LDG G+ +R VEM+ G
Sbjct: 40 VDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARG 74
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
++Y+G + NA + ++E+ YG I N+
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMS 349
VEF+D RDAED+V L+G G R+ ++ S
Sbjct: 41 VEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF 251
++ ++Y+G L + S+ +IE F YG IR+V + +N GF
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKNGFGF 40
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMS 349
VEF+D RDAED+V L+G G R+ ++ S
Sbjct: 41 VEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF 251
++ ++Y+G L + S+ +IE F YG IR+V + +N GF
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKNGFGF 40
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMS 349
VEF+D RDAED+V L+G G R+ ++ S
Sbjct: 41 VEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF 251
++ ++Y+G L + S+ +IE F YG IR+V + +N GF
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKNGFGF 40
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNI 215
VYV N G + +K +EK+F+K+GNI
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNI 239
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNI 215
VYV N G + +K +EK+F+K+GNI
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNI 179
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNI 215
VYV N G + +K +EK+F+K+GNI
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNI 176
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNI 215
VYV N G + +K +EK+F+K+GNI
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNI 239
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 135 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
C+++VGNL + E++++FS +G+I +++ GFA
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFA 153
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 135 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
C+++VGNL + E++++FS +G+I +++ GFA
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFA 153
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 135 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
C+++VGNL + E++++FS +G+I +++ GFA
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFA 153
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
+V + NL N K +E+IFS YG I+NV
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNV 162
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VE+++ DAE S++ +DG + G + VEM+ G
Sbjct: 180 VEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIG 212
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 102 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
K S ++ + S +Y+G L S+ ++ +FS+YG + N+ + R+
Sbjct: 27 KKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRD 72
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 132 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
SC +YVGNL + ++ ++F + G++R V
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRV 66
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
V+VGN+ + S+ I IFSK GN+ ++
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSI 47
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
K++VG L +N + + + +S++G I ++ V R+P
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDP 58
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
K++VG L +N + + + +S++G I ++ V R+P
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDP 58
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
K++VG L +N + + + +S++G I ++ V R+P
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDP 58
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>Z80344-3|CAB02488.2| 491|Caenorhabditis elegans Hypothetical
protein F15D4.5 protein.
Length = 491
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 174 KYEIEKIFSKYGNIRNVWVARNPPGFAL*NSKTPVMLKTLFVDLMEHAA 320
+Y+ E +K GN+ W NPP A+ N+ V F L H +
Sbjct: 335 QYQQENPVTKQGNVAPKWNEYNPPKDAIENTNKGVENTCAFCGLKNHTS 383
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
VYVGN+ + ++ +FS YG+I V
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEV 266
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 386 DCVTCGLSLCDHLTFRHESWCHSSVFHQVHEQSLQHHGGLRILQCKSGRISS 231
+C G +CD+ H + CH + F + ++S+ GL + + GR SS
Sbjct: 65 ECEKVGTPICDNFGETHINDCHFAQFQCIMKKSM----GLSLTKLHMGRCSS 112
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNP 242
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGP 199
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 78 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNP 242
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGP 199
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 132 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
S KV+VG L + + +I FS+YG ++ W +++
Sbjct: 87 SRKVFVGGLPSCVKESDILNFFSRYGRLQVDWPSKH 122
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
+VYV ++ + S+ +++ +F +G I +AR P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
+VYV ++ + S+ +++ +F +G I +AR P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
+VYV ++ + S+ +++ +F +G I +AR P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
KV+V N+ A+ E++ +FSK+G + +V
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSV 712
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
protein ZK970.5 protein.
Length = 1143
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 308 HQVHEQSLQHHGGLRILQC 252
H +H+ L+HHG LR C
Sbjct: 675 HYIHKSFLRHHGNLRSATC 693
>AF016451-12|AAB65994.1| 317|Caenorhabditis elegans Hypothetical
protein C03A7.13 protein.
Length = 317
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 75 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSK-YGNIRNV 224
FY F + T ++ W+L+C ++ + + K+E EKIF K YG+ N+
Sbjct: 188 FYS-FDLSTLYGKF--WNLACWRFLNLIRIPSLKHEQEKIFQKVYGDDFNM 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,086,937
Number of Sequences: 27780
Number of extensions: 269442
Number of successful extensions: 820
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -