Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0001
(677 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.5
AF393497-1|AAL60422.1| 143|Apis mellifera odorant binding prote... 23 2.0
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 3.5
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 4.7
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 4.7
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 4.7
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 22 6.2
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 8.2
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 21 8.2
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 8.2
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 238 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 119
FR+ T +M P+++ +F LV + P Y + +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 238 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 119
FR+ T +M P+++ +F LV + P Y + +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372
>AF393497-1|AAL60422.1| 143|Apis mellifera odorant binding protein
ASP5 protein.
Length = 143
Score = 23.4 bits (48), Expect = 2.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +1
Query: 565 KTYSFKACHVKMRVEXIWIP 624
KTY + CH K E + P
Sbjct: 124 KTYQYVQCHYKQNPEKFFFP 143
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 22.6 bits (46), Expect = 3.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 378 HAVVVPAADHTLAAGQCLHDGRLQFGRRS 464
HA P TLA G C H R G S
Sbjct: 520 HASSAPLLAATLAGGLCPHRRRANSGSTS 548
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 658 AANAGCIIIKQ*VSKXTPHA 599
A+NAG +I+Q +K PHA
Sbjct: 100 ASNAGYNVIEQVRTKEEPHA 119
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 658 AANAGCIIIKQ*VSKXTPHA 599
A+NAG +I+Q +K PHA
Sbjct: 100 ASNAGYNVIEQVRTKEEPHA 119
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 658 AANAGCIIIKQ*VSKXTPHA 599
A+NAG +I+Q +K PHA
Sbjct: 100 ASNAGYNVIEQVRTKEEPHA 119
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -1
Query: 395 GDYDCVTCGLSLCDHLTFRHESWCHSSVFHQVHEQSLQHHG 273
GD CV CGL ++ + +W + Q L H G
Sbjct: 539 GDAYCVACGLHRDTYIHAQQIAWMALKMI-QACSHHLTHKG 578
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 81 PPFSIKTKMSRYREWDLSCKVY 146
P I + M R W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 21.4 bits (43), Expect = 8.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 136 AKCTWATWVLMRLNMK 183
+KCTW R+N+K
Sbjct: 68 SKCTWTITSYHRINLK 83
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 81 PPFSIKTKMSRYREWDLSCKVY 146
P I + M R W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,840
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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