Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p22
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535...   126   1e-29
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697...    31   0.93 
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246...    30   1.6  
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    28   6.5  
03_01_0293 - 2258647-2258754,2258861-2259085                           28   6.5  

>10_06_0182 -
           11552540-11552606,11552692-11552787,11553458-11553528,
           11553660-11553764,11554149-11554239,11554331-11554381,
           11554478-11554566,11554667-11554909,11555027-11555190,
           11555883-11555988,11556075-11556242,11557456-11557494,
           11557582-11557713
          Length = 473

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/108 (56%), Positives = 75/108 (69%)
 Frame = +2

Query: 299 MTSSMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS 478
           +++S +       +L Q EAA +D+ L     FSVDQLMELAGLSVA+A+A+V+    H+
Sbjct: 6   VSASASASGEEVTHLAQREAAEIDEQLMGPLGFSVDQLMELAGLSVAAAVAEVYKLGEHT 65

Query: 479 SALIECGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQ 622
             L+ CGPGNNGGDGLVAARH+  FGY  SV YPKRTPKPLY  L  Q
Sbjct: 66  RVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKPLYSGLCTQ 113


>09_06_0020 -
           20267190-20267612,20269086-20269495,20269573-20269747,
           20270833-20271066,20271164-20271265,20271354-20272091,
           20272204-20272321,20272417-20272667,20272768-20272932
          Length = 871

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 392 KFSVDQLMELAGLSVA---SAIAKVFPPSTHSSALIECGPGNNGGDGLVA 532
           K  +D++  LAG  +    S+I+   PPS  + + +E G G+NGG GL A
Sbjct: 239 KDELDRVCALAGKFLGRPISSISSPGPPSLQACSGLELGVGSNGGFGLGA 288


>05_01_0315 -
           2468267-2468293,2469021-2469070,2469159-2469234,
           2469498-2469575,2469967-2470048,2470146-2470238,
           2470564-2470673,2470831-2470893,2471293-2471344,
           2471421-2471545,2472681-2472794,2472917-2472961,
           2473278-2473337,2474725-2474778,2474944-2474992,
           2475071-2475252,2475349-2475404,2475491-2475584
          Length = 469

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -2

Query: 214 YCFSFTNN-RYVVWFQMSVKIIFYLNPMCM-LPI*VGIIDYTLNGMICIIMYYSLIYIFT 41
           YC+S       +VW  +SV  + YL+  C+   + + +I+Y++   +  + Y S+ ++F 
Sbjct: 83  YCYSLKGRGASLVWLLLSVTYLCYLHGACVSFILLIALINYSI-VKVLEVAYLSIEHMFV 141

Query: 40  NCH 32
           + H
Sbjct: 142 DVH 144


>12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,
            4816803-4816830,4817136-4817339,4817352-4819136,
            4820358-4821139
          Length = 1241

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 473  HSSALIECGPGNNGGDGLVAARHMQLFGYNVSVHYPKR 586
            H+ ALI CG G+NG       +     G     HY KR
Sbjct: 1178 HAVALIGCGVGSNGNKTETFYKVRNSHGIKAHSHYQKR 1215


>03_01_0293 - 2258647-2258754,2258861-2259085
          Length = 110

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 536 RHMQLFGYNVSVHYP 580
           RH QLFGY  SVH P
Sbjct: 25  RHFQLFGYVASVHMP 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,420,334
Number of Sequences: 37544
Number of extensions: 386522
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)