Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p22
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical ...   107   6e-24
U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF077546-7|AAC26319.1|  534|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine re...    28   7.8  

>AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical
           protein Y18D10A.3 protein.
          Length = 348

 Score =  107 bits (258), Expect = 6e-24
 Identities = 52/108 (48%), Positives = 71/108 (65%)
 Frame = +2

Query: 338 YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIECGPGNNGG 517
           ++ Q  AA +D+ LFT+Y F V+QLMELAGL+ A AIA  +P S   +  + CGPGNNGG
Sbjct: 125 FIGQKLAAQIDEQLFTKYGFKVEQLMELAGLAAAQAIAAHYPKS---NVAVLCGPGNNGG 181

Query: 518 DGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLP 661
           DG V ARH+Q FG+  S+ YPK +   L ++L+ QC   ++ I   LP
Sbjct: 182 DGFVCARHLQQFGFTPSIVYPKESRNELMKSLVVQCETSSIPITATLP 229


>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 554 GYNVSVHYPKRTPKPLYENLLEQCIRFNVNII 649
           G NV VH    TP PL ++L E  +  N+N I
Sbjct: 53  GDNVFVHGIAATPTPLLQSLSEHAVANNLNKI 84


>AF077546-7|AAC26319.1|  534|Caenorhabditis elegans Hypothetical
           protein T08E11.8 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 712 IRHQPSTLYSXXXIFSVW*FINYIN--IESYALFQKVFIQRFGCAFRIMYRYIVSEQLHM 539
           ++HQ STL         W  +NY N  IE + L +  F++ F     +    I  E+L++
Sbjct: 306 LKHQTSTLKKLCITSEPWKMVNYSNTKIEDWKLSEDQFVEIFNKYIFLRGALIPVEKLNI 365

Query: 538 S 536
           +
Sbjct: 366 T 366


>AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 59 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 229 NVIVQVVRECSNIACSKTV*HRNYDEQYES-MQHC 330
           ++++ +  EC+N  CS    + NY + YE  MQ C
Sbjct: 148 DMVIDIPIECNNFGCSVNSCYHNYWKWYEQIMQLC 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,171
Number of Sequences: 27780
Number of extensions: 359721
Number of successful extensions: 871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)