Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p20
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    74   1e-14
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   2.9  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   8.9  

>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = +3

Query: 441 MFYAHFVLAXKGPLAKIWLAAHWDKKLTKAHVFETNIEKSVDGIL-KPKVKMALRTSGHL 617
           MFY+  +L+ KGPLAK+WLAAHW+KKL+K     T+IE+SV  I+ +    MALR SG L
Sbjct: 1   MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60

Query: 618 LL 623
           +L
Sbjct: 61  ML 62


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 221 PFVLRRLQQCVRISIYIVGVCILNVMAGNT*HLIRFRIL 105
           P+ L+ L   +R    I  +CI N+++  T  + RFR L
Sbjct: 3   PYCLKYLTNGLRSKQMINFLCIQNILSARTLKICRFRFL 41


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 304 RFLSQLYXNYTTYSFCSFDFITRC 233
           RF S +Y  Y  +SF  FD+ T+C
Sbjct: 499 RFHS-IYQIYKKWSFLKFDYFTQC 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,096
Number of Sequences: 5004
Number of extensions: 43774
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)