Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p20
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558...    64   9e-11
03_05_0045 - 20220955-20221046,20221599-20221641,20221715-202217...    31   0.56 
07_01_0022 - 146406-146498,146616-146693,146967-147020,147729-14...    31   0.98 
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    28   6.9  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    27   9.2  

>08_01_1000 +
           10154024-10154147,10155500-10155761,10155839-10155885,
           10155967-10155998,10156079-10156146,10156214-10156605,
           10156811-10157009,10157494-10157636,10157722-10158366,
           10158493-10158551,10158725-10158823
          Length = 689

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 28/61 (45%), Positives = 41/61 (67%)
 Frame = +3

Query: 441 MFYAHFVLAXKGPLAKIWLAAHWDKKLTKAHVFETNIEKSVDGILKPKVKMALRTSGHLL 620
           MFY+H +LA K PL  +W+AAH ++K+ K  +   +I    + I+ P+V +ALR SGHLL
Sbjct: 1   MFYSHTILARKSPLGTVWIAAHLERKIKKPQIDGIDIPSYAEFIMFPEVPIALRLSGHLL 60

Query: 621 L 623
           L
Sbjct: 61  L 61


>03_05_0045 -
           20220955-20221046,20221599-20221641,20221715-20221792,
           20222401-20222454,20222766-20222829,20222915-20222960,
           20223049-20223121,20223530-20223601,20224023-20224075,
           20224149-20224239,20226459-20226650
          Length = 285

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -1

Query: 337 FSLARYPFSDVRFLSQLYXNYTTYSFCSFDFITRCYFLILLSYEDFNSVSGFQYILLEFV 158
           F L R+P        +LY   T  + C   F+ RC  + + S++   S+    + +L+F 
Sbjct: 179 FMLRRFPIESKGRRKKLYEVGTVTAICFTCFLIRCIVVAMSSFDPDLSLEVLDHPILDFF 238

Query: 157 Y*M 149
           Y M
Sbjct: 239 YYM 241


>07_01_0022 -
           146406-146498,146616-146693,146967-147020,147729-147792,
           147900-148018,148207-148278,148544-148596,148746-148836,
           148956-149099
          Length = 255

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 337 FSLARYPFSDVRFLSQLYXNYTTYSFCSFDFITRCYFLILLSYEDFNSVSGFQYILLEFV 158
           F L R+P        +LY   T  + C   F+ RC  + + +++   S+    + +L+F 
Sbjct: 163 FLLRRFPIESKGRKKKLYEVGTVTAICCACFLIRCIVVAISAFDSDVSLEVLDHPILDFF 222

Query: 157 Y*M 149
           Y M
Sbjct: 223 YYM 225


>01_06_0556 +
           30207124-30207581,30207692-30207901,30208016-30208100,
           30208517-30208676,30208768-30208844,30208985-30209032,
           30209504-30209594,30209703-30210004,30210214-30210495,
           30210695-30211011,30211113-30211273,30211556-30211665,
           30211752-30211902,30212438-30212578,30212688-30212857,
           30213485-30213817,30213981-30214271,30214356-30214439,
           30214620-30214753,30214946-30215173,30215273-30215444,
           30215621-30215875,30215963-30216232
          Length = 1509

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 429 ATIIMFYAHFVLAXKGPLAKIWLAAHWDKKLTKAHV-FETN 548
           A +IMF     +  K  + K W+ A+W   LT A++ F +N
Sbjct: 716 AVLIMFVLGGFILPKDAIPKWWVWAYWCSPLTYAYIAFSSN 756


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 531  VLXSISYPSGPPAKSWPADP 472
            VL S+  P+ PP+ S PADP
Sbjct: 5142 VLASLHLPAPPPSPSMPADP 5161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,372,624
Number of Sequences: 37544
Number of extensions: 254727
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)