Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p20
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mito...   103   1e-22
U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family ...    96   2e-20
Z73899-6|CAA98078.1|  345|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    30   1.2  
AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine re...    29   2.0  
AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine r...    29   2.7  
AC084155-6|AAK84607.1|  609|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine re...    29   3.6  
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    28   6.2  

>U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mitotic
           condensin subunit)homolog protein 1 protein.
          Length = 645

 Score =  103 bits (247), Expect = 1e-22
 Identities = 43/61 (70%), Positives = 55/61 (90%)
 Frame = +3

Query: 441 MFYAHFVLAXKGPLAKIWLAAHWDKKLTKAHVFETNIEKSVDGILKPKVKMALRTSGHLL 620
           MFYA FVLA KGPLAK+WLAAHW+KKLTKA +FET++ ++++ +++PKVKMALRT GHLL
Sbjct: 1   MFYAQFVLAKKGPLAKVWLAAHWEKKLTKAQIFETDVPQAIEEVIRPKVKMALRTVGHLL 60

Query: 621 L 623
           L
Sbjct: 61  L 61


>U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family
           protein 1 protein.
          Length = 652

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 39/61 (63%), Positives = 55/61 (90%)
 Frame = +3

Query: 441 MFYAHFVLAXKGPLAKIWLAAHWDKKLTKAHVFETNIEKSVDGILKPKVKMALRTSGHLL 620
           MFYA FVL+ KGPL+K+WLAAHW+KKL+KA +FET+++++V+ I++P  K+ALRT+GHLL
Sbjct: 56  MFYADFVLSKKGPLSKVWLAAHWEKKLSKAQIFETDVDEAVNEIMQPSQKLALRTTGHLL 115

Query: 621 L 623
           L
Sbjct: 116 L 116


>Z73899-6|CAA98078.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK829.8 protein.
          Length = 345

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 262 FCSFDFITRCYFLILLSYEDFNSVSGFQYILLEF 161
           FC   FI    FL+LL ++    + G++Y+L+ F
Sbjct: 15  FCVLSFIFNILFLVLLKFKSPRYIGGYRYLLMTF 48


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 277 YTTYSFCSFDFITRCYFLILLSYEDFNSVSGFQYILLEF 161
           Y   +FC   F+   +F+ L+  ED      ++Y+LL F
Sbjct: 9   YLPATFCVLAFLVNPFFIYLIFTEDPTKFGNYRYLLLSF 47


>AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein55 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 298 LSQLYXNYTTYSFCSFDFITRCYFLILLSYEDFNSVSGFQYILLEF 161
           L Q +  Y    FC   F+    F+ L+  E   +   ++Y+LL F
Sbjct: 2   LDQWFFLYIPLIFCGLSFLVNPVFIYLIFTEKSTNFGNYRYLLLYF 47


>AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein130 protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 313 SDVRFLSQLYXNYTTYSFCSFDFITRCYFLILLSYEDFNSVSGFQYILLEFV 158
           SD+ F    Y   T  ++C F      +   +L+YE + SV+ F   +  F+
Sbjct: 8   SDLDFCFPGYDKSTALAYCDFQEFVEKFSSRILNYESYISVASFFINIFHFI 59


>AC084155-6|AAK84607.1|  609|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.8 protein.
          Length = 609

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 39  ILHKLNSKCPYE 74
           I+HKLNS+CPYE
Sbjct: 534 IIHKLNSECPYE 545


>AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine
           receptor, class sx protein5 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 122 SSVXCCLPLHLIYKLQQYILKSGHTVEV 205
           S + CC  LH IYK    +  +GH+ +V
Sbjct: 279 SCIPCCRKLHKIYKKSTKVSATGHSQQV 306


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 277 YTTYSFCSFDFITRCYFLILLSYEDFNSVSGFQYILLEF 161
           Y   +FC+  F+    F+ L+  E  +    ++Y+LL F
Sbjct: 9   YLPRTFCALTFLVNPIFIYLIFSEKSSKFGNYRYLLLYF 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,924
Number of Sequences: 27780
Number of extensions: 244934
Number of successful extensions: 557
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)