Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p18
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       40   0.002
10_08_0007 + 14044844-14045767                                         39   0.004
11_04_0234 + 15187065-15188241,15188316-15188494                       30   1.5  
10_08_0009 + 14075929-14076789                                         29   4.6  
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541...    28   6.1  
08_01_0348 - 3076395-3078236                                           28   6.1  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
 Frame = +1

Query: 484 LKQENPALKVLISVGGAGEASG------------FRDMVANHASRKIFIKSIKTILRNYK 627
           +K +N A+K ++S+G  G A G            F  M A+ ASR  FI +   + R   
Sbjct: 100 VKAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENG 159

Query: 628 LDGIDLDWEFP 660
            DG+D+ W FP
Sbjct: 160 FDGLDVAWRFP 170


>10_08_0007 + 14044844-14045767
          Length = 307

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
 Frame = +1

Query: 463 TITELCKLKQENPALKVLISVGGA--GEASGFRDMVANHASRKIFIKSIKTILRNYKLDG 636
           T + +  +KQ NP ++V +S+GGA   +   F ++ +  +     ++S+  I+++  LDG
Sbjct: 89  TPSAVASIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQDNNLDG 148

Query: 637 IDLDWE 654
           ID+D+E
Sbjct: 149 IDIDYE 154


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 544 SGFRDMVANHASRKIFIKSIKTILRNYKLDGIDLDWEFP 660
           + F  M +    R+ FI S   + R    DG+DL W FP
Sbjct: 127 AAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165


>10_08_0009 + 14075929-14076789
          Length = 286

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +1

Query: 487 KQENPALKVLISVGG-AGEASGFRDMVANHASRKIFIK----SIKTILRNYKLDGIDLDW 651
           K  +P L V++++GG   + +G     A  +S   +++    S+  ++  Y LDG+D+D+
Sbjct: 75  KAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGVDVDY 134

Query: 652 E 654
           E
Sbjct: 135 E 135


>08_01_0619 +
           5412058-5413224,5413357-5413476,5413755-5413831,
           5414201-5414321
          Length = 494

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 259 WNAADHYIPELASTCIQQFQGL*KGSLS 176
           +N ADH++   AS  +  F+GL K +LS
Sbjct: 213 YNPADHHVHRYASNLLATFEGLYKEALS 240


>08_01_0348 - 3076395-3078236
          Length = 613

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 283 IPVTSDIKSNTVVSCYYNTPDNDGKQLLPASI 378
           IP    +  NT++SC++ + D DG + L AS+
Sbjct: 75  IPTPDAVSYNTLLSCHFASGDADGARRLFASM 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,782,606
Number of Sequences: 37544
Number of extensions: 364061
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)