Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p17
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    26   5.3  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   5.3  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   5.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.3  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   5.3  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   7.1  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   7.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   7.1  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 454 VHNILDVDKDGLISYNDFLLFAERFKSLGHLDAK 555
           V N+ D DK+G I + +F+  A    S G L+ K
Sbjct: 68  VFNVFDADKNGYIDFKEFIC-ALSVTSRGELNDK 100


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 294 RVAPQLIKTLLQQTAWPTGNRQKE 365
           R  PQL K LL QTA P  + Q++
Sbjct: 673 RAHPQLPKNLLSQTAGPLWDEQQD 696


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 450 THLAAPELRPVQPLTLGVRVGIRFRIGLFPSVYFRSA--MLFAVTT 319
           TH+   +LRP       +  G  F +  FP+ +F S   + FA+ T
Sbjct: 204 THIILRDLRPAGSKKRVIPTGYGFNLVSFPNYFFESLGWLFFALLT 249


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 128 WDYVP*LTWRRARVLCFYPVLKSNIS*F 211
           W Y+  +  +RAR LCF+ VL S  S F
Sbjct: 174 WQYLSAIAGKRARSLCFH-VLSSKSSTF 200


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 581 MMSVNSFACFASRWPRDLNLS-ANSK-KSLYEISPSLSTSKM 462
           + SV +    A  WP+ LNLS AN++  SL ++ P    +K+
Sbjct: 226 LQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKL 267


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 238 VCHLEDRPRHVKRESRELTELPHSSLRRCYSKQHG 342
           VCH+    R+VK  +    ELP   L+   S Q+G
Sbjct: 499 VCHVTFFDRYVKEITTPQNELPTIFLQEIASNQYG 533


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 389 PTLTPSVRGWTGLSSGAARCV 451
           PTL P V GW G+ +G  R +
Sbjct: 239 PTLGPLVGGWIGVGTGDFRWI 259


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
 Frame = +1

Query: 172 MFLPSVKIQYKLIHTKPTCNG-------SVCHLEDRPRHVKRESRELTELPHSSLRRCYS 330
           +F  +  I    IH +PTC G       S   L+   R +   S  +T +P +    C +
Sbjct: 545 LFASTTNIMSTFIHNEPTCYGIIHEKKLSHAFLDAVNRKILNSSDAITSIPLAFGAICLN 604

Query: 331 KQHGRPEIDRRKQPXXXXXXXXXTECKGLDRSE 429
            Q     +++   P           CK L  S+
Sbjct: 605 SQGFDLFLEKNPIPQLFSIFTSLNHCKSLISSD 637


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -3

Query: 575 SVNSFACFA-SRWPRDLNLS---ANSKKSLYEISPS 480
           +V +F  F+ S +PR  N     + S KSLYE+SPS
Sbjct: 299 NVTTFRRFSQSSYPRRSNYRRRISTSSKSLYELSPS 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,990
Number of Sequences: 5004
Number of extensions: 50630
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)