Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9p17
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 30 1.8
05_01_0450 + 3577928-3579526,3579695-3579832 30 1.8
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795... 29 4.2
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 28 5.5
03_02_0347 - 7676510-7677832 28 5.5
01_06_0369 - 28794283-28794427,28794865-28795874 28 5.5
09_02_0300 - 7073153-7073589,7074058-7074169 28 7.3
12_01_0098 - 765949-766110,766220-766446,766722-766880,766985-76... 27 9.7
07_03_1138 - 24240155-24240219,24240427-24240559,24240640-242411... 27 9.7
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 27 9.7
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 439 RKMRTVHNILDVDKDGLISY 498
RK+R++HN LD ++ GL+ Y
Sbjct: 11 RKLRSLHNALDCERSGLVRY 30
>05_01_0450 + 3577928-3579526,3579695-3579832
Length = 578
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 463 ILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIK 585
+LD + DG +S ++F LF +R K L+ K E+ +I+K
Sbjct: 513 LLDANSDGSLSSDEFALFQKRVKLKTKLENKD-DEYKEILK 552
>06_03_0899 -
25776159-25776797,25776898-25777806,25779425-25779592,
25779703-25779890,25779993-25780137,25780566-25780775
Length = 752
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 439 RKMRTVHNILDVDKDGLISYNDFL--LFAERFKSLGHLDAKQAKEFTDIIKMTWEQQ 603
RKMR H IL + GL+ N L F ++ L + K ++E + II T+E++
Sbjct: 177 RKMREEHKILKLMLGGLLEQNGVLKRAFLKQHNRLNDYEKKMSQERSQIID-TYEKE 232
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 220 PTCNGSVCHLEDRPR-HVKRESRELTELPHSSLRRCYSKQHG 342
P G HL++ R + R+SREL L HSSLR + G
Sbjct: 253 PPYRGCRYHLKEYDRRNYPRDSRELFNLRHSSLRVTIERAFG 294
>03_02_0347 - 7676510-7677832
Length = 440
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 279 IAGAHRVAPQLIKTLLQQTAWPTGNRQKETA 371
IA A+ A Q+++ + +T WP+ ETA
Sbjct: 260 IAAANTAAAQVVEVRISETGWPSSGDPGETA 290
>01_06_0369 - 28794283-28794427,28794865-28795874
Length = 384
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 436 RRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTD 576
++KM D+D D +S +DFL++ + K +G +D K +D
Sbjct: 318 QKKMDNEPLAADLDHDASVSKSDFLIY--KLKEIGKIDDKDIAMISD 362
>09_02_0300 - 7073153-7073589,7074058-7074169
Length = 182
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 630 EIVRVYGAPLLLPCHL--DDVG 571
E++R+ AP ++PCHL D+VG
Sbjct: 147 EVIRINTAPRVIPCHLEGDNVG 168
>12_01_0098 -
765949-766110,766220-766446,766722-766880,766985-767063
Length = 208
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 457 HNILDVDKDGL-ISYNDFLLFAERFKSLGHLDAKQAKEFTDIIK 585
H I D++ L I YN ++ E+ LGHL++ + K+ ++++
Sbjct: 26 HGITDIEIHFLQIKYNAIGVYLEKDNVLGHLESWKGKKAEELVQ 69
>07_03_1138 -
24240155-24240219,24240427-24240559,24240640-24241182,
24241306-24241411,24241630-24241727,24242289-24242516,
24242990-24243307,24243411-24243695,24243706-24243771,
24244337-24244738
Length = 747
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 235 SVCHLEDRPRHVKRESRELTELPHS 309
SV +++R RHVK +SRE E+P S
Sbjct: 535 SVAQVKERSRHVKNDSRE--EIPFS 557
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 537 RPPRREAGEGIHRHHQDDMGATMGHHRP 620
+PPRR+ + +H+ + ++G GH RP
Sbjct: 35 KPPRRDPSDSVHKVARREIGG--GHRRP 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,858,167
Number of Sequences: 37544
Number of extensions: 360685
Number of successful extensions: 956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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