Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p09
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    29   0.022
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    29   0.022
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   1.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 0.022
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 106 IQPWIQWRRYVLEKNMALCGWKY 174
           I P   W RYV E NM  CG  Y
Sbjct: 184 IAPMFGWNRYVPEGNMTACGTDY 206


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 29.5 bits (63), Expect = 0.022
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 106 IQPWIQWRRYVLEKNMALCGWKY 174
           I P   W RYV E NM  CG  Y
Sbjct: 60  IAPMFGWNRYVPEGNMTACGTDY 82


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 331 DIMLKRMDLDHDGVINFTDFRQC 399
           D+ L  + LD DG I   DF  C
Sbjct: 110 DLKLDNVLLDQDGHIKIADFGMC 132


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 241 LSDLRREDRNISNSSKVKCVSFCISIHIEPCFFLKRISSIGSKAESSD 98
           + + + ED+ ++     +CV   +  HI         S+  S+ ESSD
Sbjct: 102 VDNAKNEDKCLTAQKFSRCVIDYVKFHITQYMISNANSNTTSEEESSD 149


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +1

Query: 169 KYKKIRTSLLMN*KCYDLLGEGHLRRETMYQLMKKSLAKASRD 297
           +Y+K++  +++  + Y      H ++  + +   KS +  SRD
Sbjct: 52  EYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKSPESRD 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,510
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)