Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p08
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   3.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   3.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.6  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 705 KKCQQINRKTECADNTQTHLNDQ 637
           KKC  +    ECAD  +  L D+
Sbjct: 220 KKCDWVRNVPECADWYKGRLTDE 242


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 173 FNRYYNNIISVTVTVTFSEC-NNYIKCTDCNNLRL 72
           F R YNNI S++      EC  N    T C   RL
Sbjct: 29  FGRTYNNISSISECKNNGECVINKKNRTACKACRL 63


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 119 ECNNYIKCTDCNNLRLGVN 63
           ECN Y    D N+  LG+N
Sbjct: 505 ECNTYACEFDGNDCSLGIN 523


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,157
Number of Sequences: 336
Number of extensions: 3072
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)