Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p07
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    30   0.35 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   2.5  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   4.3  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   4.3  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   5.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   5.7  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   10.0 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   10.0 
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   10.0 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   10.0 
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   10.0 

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 432 LYKTNKPNTAKTVWMHVFIEKDKEIDFDE 518
           LYKT +    KT W  V I KD EID  +
Sbjct: 111 LYKTKECTFCKTEWDTVLITKDHEIDIHD 139


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 228 NRIKVNLKGAAAIIKHWP 281
           +R+KVN KG   ++K WP
Sbjct: 69  HRLKVNDKGGMTVVKSWP 86


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +3

Query: 435 YKTNKPNTAKTVWMHVFIEKDKEIDFDEYIPYIKLLSEKHPSYIYRLIVVLNDTKLSNYH 614
           YKT +    K +   +  + D  +  +  I Y+KLL   H   +Y +I    D  +   +
Sbjct: 54  YKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEY 113

Query: 615 IIGEENNEIAMSTLWTE 665
             GE  + I      TE
Sbjct: 114 AGGELFDYIVEKKRMTE 130


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 168 LSEEDQSIPRHYRRRSFSNRNRIKVNLK 251
           LSEED+   +  RRR F N +R + N K
Sbjct: 92  LSEEDEVDKKEKRRRRFENGSRSQNNAK 119


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 191  STSLPTPFLFEQKSYQSKSERSRCYY*TLARSLDQICSVL 310
            S+S+P P L      QSK E S   Y T   S D   +VL
Sbjct: 954  SSSIPGPVLLASLKSQSKDEYSVLLYGTEVSSSDTYLNVL 993


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 231 DFCSKRNGVGNDVESTDLPQRVRHA 157
           DFCS   G  N    T  P + RHA
Sbjct: 352 DFCSNFKGKNNSSSITSSPSKSRHA 376


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 393 QLKPVTNQIFDTGLYKTNKPNT 458
           +L P  +QIFD G+  T  PNT
Sbjct: 508 KLLPSESQIFDEGIAVTQTPNT 529


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 462 KTVWMHVFIEKDKEIDFDEYIPYIKLLSEKHPSYIYRLIVVLND 593
           K ++  V +  D  +D     PY++L  EKH    +R + V  D
Sbjct: 716 KVIFSVVPLPFDVPVDNSVDFPYLRLFLEKHADDFFRCLEVAFD 759


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = -1

Query: 379 NVKIKKLLYIINVVMVIIPSPIHQYATNLVQ*SGQCLIIAA 257
           N K++ +  I +V++  +PS  +++ +NLV+    C+  ++
Sbjct: 234 NFKLEDVAPISDVIICGVPSANYKFPSNLVRDGAVCICFSS 274


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 547  SDSNLIYGMYSSKSISLS 494
            +D+NLIYG+ S   +SLS
Sbjct: 1467 TDANLIYGILSGDELSLS 1484


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +3

Query: 276 WPDHWTRFVAY----WWIGLGMITITTFIIYNSFFILTLMPEAQLKPVTNQIFDTGLYKT 443
           W D    FV Y    W I   +  +T FI+    F   L P A++     ++F +   KT
Sbjct: 254 WHDSDAGFVFYMLHHWAIFTFLGFLTFFIVVYFIFGYALKPAARVSRTGRRVFSSPFSKT 313

Query: 444 NKPNTAKTVWMHVFIEKDKEID 509
           + P+  K    H F   +++ D
Sbjct: 314 S-PSRWKI--FHRFTSSNEKYD 332


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
 Frame = +3

Query: 288  WTRFVAYWWIGLGMITITTFII------YNSFFI 371
            W   + YWW+ +  + +  F+       +N FF+
Sbjct: 1530 WVAHLIYWWVSIMALCVAPFLFNPHQFDWNDFFV 1563


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 186 TDLPQRVRHAAKDNAHGIQTSLSLRLTVKKRVYSLLLMICLMIIK 52
           T +  RVR A  +   G  TSL + +      YS L  I  MI +
Sbjct: 31  TSMEARVREATNNEPWGASTSLMMEIAQGTHNYSQLNEILPMIYR 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,852
Number of Sequences: 5004
Number of extensions: 61525
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)