Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p07
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092...    31   1.1  
12_02_0961 - 24851687-24851962,24852134-24852405,24852521-248529...    30   1.9  
05_04_0397 - 20937280-20937386,20937494-20939681                       29   2.6  
10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788,957...    28   5.9  
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259...    28   7.8  
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    28   7.8  

>01_03_0010 -
           11608537-11608786,11608816-11608940,11609152-11609217,
           11609741-11609872,11610507-11610608,11610743-11610940,
           11611015-11611161,11611321-11611431,11613241-11613780,
           11613847-11614003,11614148-11614297,11614375-11614514,
           11615346-11615468,11615561-11615677,11617184-11617357,
           11617768-11617909,11618076-11618194,11619773-11619955
          Length = 991

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 141 EHYPLLHDELSEEDQSIPRHYRRRSFSNRN 230
           EH P++HD+   +D  +P  +   S  NRN
Sbjct: 73  EHIPVVHDDDEADDVHVPSQHDEHSVKNRN 102


>12_02_0961 -
           24851687-24851962,24852134-24852405,24852521-24852953,
           24853554-24853676,24853681-24853686
          Length = 369

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +3

Query: 387 EAQLKPVTNQIFDTGLYKTNKPNTAKTVWMHVFIEKDKEIDFDEYIPYIKLLSEKHPSYI 566
           + +  P  +  F TG  +   PN++++   H  IE++K  D DE+  Y      +H  Y 
Sbjct: 182 KTKTNPNKDDPFSTGK-EPEDPNSSRSHVKHEMIEEEKSDDDDEHADY------EHADYY 234

Query: 567 YRLIVVLNDTKLSNYHIIGEENNEI 641
           Y        ++ +NY + GEE  EI
Sbjct: 235 Y--------SRFANY-LTGEEREEI 250


>05_04_0397 - 20937280-20937386,20937494-20939681
          Length = 764

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 40/144 (27%), Positives = 54/144 (37%), Gaps = 8/144 (5%)
 Frame = +3

Query: 114 LRIVMSEYREHYPLLHDELSEEDQSIPRHY--RRRSFSNRNRIKVNLKGAAAIIKHWPDH 287
           ++IV +      P L  E+ E    +  H    RRS +N  RI     G AA  K     
Sbjct: 563 MQIVAARLSRAEPPLRREVVEYMLDVGSHMFSLRRSKANFYRITSLFCGFAATAK----- 617

Query: 288 WTRFVAYWWIGLGMITITTFIIYNSFFILTLMPEAQLKPVTNQIFDTGL----YKTNKPN 455
           W   +  W        ITT +++  F IL   PE  L  +   +F  GL    YK   P 
Sbjct: 618 WYDGIRSW-----RNPITTVLVHMLFLILICYPELILPTIFLYMFMIGLWNYRYKPRHPP 672

Query: 456 TAKTVWMHVFIEKDKEID--FDEY 521
              T   H       E+D  FD +
Sbjct: 673 YMDTKLCHAEFTNPDELDEEFDSF 696


>10_06_0010 +
           9574265-9574524,9574629-9574956,9576663-9576788,
           9576948-9577067,9577350-9577562,9577653-9577764,
           9578033-9578217,9578310-9578660,9578826-9579383
          Length = 750

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 568 YI*DGCFSDSNLIYGMYSSKSISLSFSMNTCIHTVF 461
           Y   GCF    +IYGM + +  +  +S N  +H+ F
Sbjct: 363 YCGTGCFHRRKVIYGMRTGREGTTGYSSNKELHSKF 398


>10_07_0055 -
           12424320-12424899,12424978-12425160,12425810-12425958,
           12426339-12426518,12426610-12426729,12427240-12427383,
           12427613-12427777,12427879-12428184,12428258-12428621,
           12428746-12429074
          Length = 839

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +3

Query: 375 TLMPEAQLKPVTNQIFDTGLYKTNKPNTAKTVWMHVFIEKDKEIDFDE 518
           TL+P    KPVTN      L K   P TAK      ++  +KEID +E
Sbjct: 95  TLLPSKASKPVTN-----FLRKRVDPETAKYFLEISYLFDNKEIDLEE 137


>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 141 EHYPLLHDELSEEDQSIPRHYRRRSFSNRN 230
           EH P+ HDE   +D ++P      S  +RN
Sbjct: 174 EHMPVGHDEDEADDVNVPAQAEENSIRHRN 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,219,857
Number of Sequences: 37544
Number of extensions: 316992
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)