Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p04
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    31   0.20 
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    30   0.36 
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    29   0.82 
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    28   1.4  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.9  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    26   5.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.8  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 82  DSQSENQALLRIEEVACDDVSTISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGKKEQ 261
           DS  E Q L  I++++ D+   +S    +ELP    Q  +  ++  + +  IDI  K++ 
Sbjct: 622 DSLKEKQNLFAIQDISLDEPQRLSLYELEELPTGLLQSSILFITLNLIEMAIDIYFKEQA 681

Query: 262 HV 267
            +
Sbjct: 682 FI 683


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 469 DRVICAHCQDTFLYQSLKNMPVRCPHCRKVSFVRSPSGGSKARVKGIIF 615
           D + C  C+  FL+  LK    R  +C+  +F+R+ S  S A+  GI+F
Sbjct: 537 DLMECLLCELGFLFAMLKESTGR--NCQATNFLRAFSNSSFAQSLGIVF 583


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 481 CAHCQDTFLYQSLKNMPVRCPHC 549
           C++C  TF+ + ++N    CP C
Sbjct: 365 CSNCSQTFINEDIQNSSAFCPKC 387


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 561 ICSFTIRRFQSSS*RYYICCSGCNFPYHCFGCHP 662
           +CS   R     S R  + C GCN PYH    HP
Sbjct: 192 LCSVCQRGHSPLSNRI-VFCDGCNSPYHQLCHHP 224


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 564 CSFTIRRFQSSS*RYYICCSGCNFPYHCFGCHPWHI 671
           CS   +R QS      + C GCN P+H   CH  +I
Sbjct: 235 CS-VCQRLQSPPKNRIVFCDGCNTPFHQL-CHEPYI 268


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 178 EATHRAQLGRLCSHHHMRPLQF---SAKLDFHFGCPPLWLSTKILHN 47
           +   R    +  + H  + LQ+   SAK +++F  P LWL+ K++ N
Sbjct: 124 DVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGN 170


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 166 DELPPPYQQVGMPMVS 213
           D LPPPYQ + +P V+
Sbjct: 221 DSLPPPYQVLSVPSVT 236


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 157 IGPDELPPPYQQVGMPMVSCRVCQALIDIRGKK 255
           + P  +P PYQ   +  +  R   + +D+  KK
Sbjct: 305 LDPSRIPSPYQPSSLQPLESRKLHSKVDVHSKK 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,791
Number of Sequences: 5004
Number of extensions: 64680
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)