Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9p04
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0181 + 20985960-20987825,20987904-20989169 31 0.84
08_01_0212 - 1680199-1680240,1680661-1680723,1681620-1681729,168... 30 1.5
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 30 2.0
05_07_0015 + 27065104-27065428,27065539-27066257 29 2.6
04_04_0339 - 24513699-24516827 29 2.6
02_04_0110 - 19817506-19817847 29 4.5
07_03_0030 - 12623238-12623396,12623494-12623687,12624228-126243... 28 6.0
08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006... 28 7.9
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890... 28 7.9
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 28 7.9
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 28 7.9
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 478 ICAHCQDTFLYQSLKNMPVRCPHCRKVSF 564
IC HCQ FLY +N RC C K F
Sbjct: 171 ICPHCQKRFLYYQ-RNFLARCSDCGKRFF 198
>08_01_0212 -
1680199-1680240,1680661-1680723,1681620-1681729,
1681869-1682101,1683000-1683092,1683895-1683974,
1685148-1685156,1685243-1685245
Length = 210
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Frame = +1
Query: 283 CKEATPIKNAPPGK------KYVRCPCNCLLICKSSSQRIACPRADCKRIINLAXXXXXX 444
CK AT I++ PP + + C ++ + + CP + +N +
Sbjct: 47 CKTATAIRSRPPDSYRHMQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVAD-- 104
Query: 445 XXXXXXGMDRVICAHCQDTFLYQSLKNMPVRCPHCRKVSFVRS 573
M +IC+ C T L+ + +RCP C +++ RS
Sbjct: 105 -------MSELICSGCP-TLLFYNRGASNIRCPSCNRLNSTRS 139
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 481 CAHCQDTFLYQSLKNMPVRCPHCRKVSFVRSPSGGSKARVKGIIFAVL 624
C H + LY S ++ V+C RK + SGG A G FA L
Sbjct: 429 CLHIPEVALYNSKADLEVKCKEMRKAD-IGLVSGGFDAGEPGSTFASL 475
>05_07_0015 + 27065104-27065428,27065539-27066257
Length = 347
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 136 DVSTISPIGPDELPPPYQQVGMPMVSCRVCQALIDIRGKK 255
D S ++ P ELPPP VG P+ +LID GK+
Sbjct: 55 DDSPVTTTFPKELPPPPAAVGPPIFMASATTSLID-HGKE 93
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 205 MVSCRVCQALIDIRGKKEQHVVKCSE 282
++ C C+ L ++RG +E H+ +C+E
Sbjct: 951 LLECSECEGLRELRGIEELHISRCTE 976
>02_04_0110 - 19817506-19817847
Length = 113
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +1
Query: 475 VICAHCQDTFLYQSLKNMPVRCPHCRK---VSFVRSPSGG 585
++ A C FLY L RCP CR + F+ + GG
Sbjct: 62 MVLAACPRCFLYVMLAEADPRCPKCRSPVILDFLHAGGGG 101
>07_03_0030 -
12623238-12623396,12623494-12623687,12624228-12624332,
12625328-12625392,12626151-12626350,12626466-12626604,
12626677-12626804,12630145-12630369,12630461-12630670
Length = 474
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 501 ILVSISEEHACSVSSLSEG 557
I VS SE+H C + SLSEG
Sbjct: 223 IAVSSSEDHTCKIWSLSEG 241
>08_02_0306 -
15599409-15599657,15600326-15600475,15600574-15600663,
15600776-15601126,15601389-15601430,15601523-15601600
Length = 319
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 130 MRPLQFSAKLDFHFGCP-PLWLSTK 59
+R F KL+ HFGCP +W S K
Sbjct: 225 IRAAPFIEKLEVHFGCPHHVWFSDK 249
>04_04_0308 +
24286923-24286927,24288430-24288907,24288980-24289099,
24289182-24289235,24289467-24289579,24289799-24290011,
24290123-24290201,24290323-24290376,24290448-24290522,
24291029-24291193,24291843-24291941,24292186-24292241,
24292331-24292433,24293289-24293417,24293657-24293835,
24293953-24293977,24294060-24294175,24294252-24294342
Length = 717
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 364 CKLVGNCKGTEHTSCL 317
CK G C G++HT C+
Sbjct: 599 CKRTGGCSGSQHTPCI 614
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 185 YGGGNSSGPIGEIVLTSSHATSSILSKA*FSL 90
+G GP GE++ T+ H ++I+++ +SL
Sbjct: 287 WGHSTLVGPFGEVIATAEHEETTIMAEIDYSL 318
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 192 SRDAYGLLPSVPSTD*HSWEKRATCSEMFRMQRSYAYKECSARQE-VCSVPLQLPTN 359
+R+ +G +P++ D WE RA C + R + K+ ++ + V L++ +N
Sbjct: 48 ARNPFGQVPALQDGDLFLWESRAICKYVCRKNKPELLKDGDLKESAMVDVWLEVESN 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,469,469
Number of Sequences: 37544
Number of extensions: 452713
Number of successful extensions: 1349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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