Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9p04
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.67 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.2  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 633 NYSQNSKYNTFNSSFGT 583
           NY+ N+ YN +N+++ T
Sbjct: 91  NYNYNNNYNNYNNNYNT 107


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -2

Query: 311 AFFIGVA--SLHSEHFTTCCSFFPRMSISAWHTRQETIGIP--TC*YGGGNSSGPIGEIV 144
           +FF  V+  SL SE++T     F    ++ +  R         T  Y GG +    G + 
Sbjct: 98  SFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRLNYSAFVNLTAYYDGGANLNLNGTVN 157

Query: 143 LTSSHATSSILS 108
            TSS A+S ++S
Sbjct: 158 CTSSIASSGVVS 169


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 523 NMPVRCPHCRK 555
           N P  CP+CR+
Sbjct: 3   NEPQECPYCRR 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,878
Number of Sequences: 438
Number of extensions: 4569
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)