Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o24
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    29   3.1  
U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell ...    29   3.1  
AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.    29   3.1  
Z81117-2|CAB03314.2|  343|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 659 FGSLCFNFVGILFIWCINF--FY*RLFYFD*CLIFRKV 552
           FGS+ F   G +F W  NF   +   F+F  CL F  V
Sbjct: 183 FGSIIFRVTGTMFGWTNNFLLMFNTFFWFSICLGFNLV 220


>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 407 NVISELQLVFNDVNCQKCTDCMERAVKAFIINQHIISSRPNLEDFQNDVLYEKLNINRNK 586
           N++  + ++ +D    KC DC    +K+ +I+ H    R N ED  +D+  +++    N 
Sbjct: 354 NLLRHVIMIHSDCKPYKCWDCDFTGIKSNVIS-HARQCRHNAED-AHDITTDEMRAEWNL 411

Query: 587 R 589
           R
Sbjct: 412 R 412


>U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell
           lineage protein 26 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 407 NVISELQLVFNDVNCQKCTDCMERAVKAFIINQHIISSRPNLEDFQNDVLYEKLNINRNK 586
           N++  + ++ +D    KC DC    +K+ +I+ H    R N ED  +D+  +++    N 
Sbjct: 320 NLLRHVIMIHSDCKPYKCWDCDFTGIKSNVIS-HARQCRHNAED-AHDITTDEMRAEWNL 377

Query: 587 R 589
           R
Sbjct: 378 R 378


>AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 407 NVISELQLVFNDVNCQKCTDCMERAVKAFIINQHIISSRPNLEDFQNDVLYEKLNINRNK 586
           N++  + ++ +D    KC DC    +K+ +I+ H    R N ED  +D+  +++    N 
Sbjct: 320 NLLRHVIMIHSDCKPYKCWDCDFTGIKSNVIS-HARQCRHNAED-AHDITTDEMRAEWNL 377

Query: 587 R 589
           R
Sbjct: 378 R 378


>Z81117-2|CAB03314.2|  343|Caenorhabditis elegans Hypothetical
           protein T06E6.4 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 686 YFVTRDLVRFGSLCFNFVGILFIW 615
           Y +T D++  GSL  NF+ +  IW
Sbjct: 13  YLLTLDIIGGGSLSMNFLAMYMIW 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,561,806
Number of Sequences: 27780
Number of extensions: 255274
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)