Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9o24
(691 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein ... 26 0.39
AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein ... 26 0.39
AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific pro... 26 0.39
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.90
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 2.1
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.1
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 2.1
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 3.6
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 22 4.8
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 22 4.8
>DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein 3
protein.
Length = 130
Score = 25.8 bits (54), Expect = 0.39
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 416 SELQLVFNDV---NCQKCTDCMERAVKAFIINQHIISSRPNLED 538
+EL+ V D +C+KCTD +K I + ++ ++P L D
Sbjct: 62 NELKRVLPDALATDCKKCTDKQREVIKKVI--KFLVENKPELWD 103
>AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein
protein.
Length = 130
Score = 25.8 bits (54), Expect = 0.39
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 416 SELQLVFNDV---NCQKCTDCMERAVKAFIINQHIISSRPNLED 538
+EL+ V D +C+KCTD +K I + ++ ++P L D
Sbjct: 62 NELKRVLPDALATDCKKCTDKQREVIKKVI--KFLVENKPELWD 103
>AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific
protein 3c precursor protein.
Length = 130
Score = 25.8 bits (54), Expect = 0.39
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 416 SELQLVFNDV---NCQKCTDCMERAVKAFIINQHIISSRPNLED 538
+EL+ V D +C+KCTD +K I + ++ ++P L D
Sbjct: 62 NELKRVLPDALATDCKKCTDKQREVIKKVI--KFLVENKPELWD 103
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.6 bits (51), Expect = 0.90
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 619 MKRIPTKLKQREPKRTRSR 675
+K +PT L R PK+TR R
Sbjct: 339 LKYLPTILMMRRPKKTRLR 357
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 93 NAAKPKVRYSNSLGVHEVSSCHMKNFA 13
NAA PK+ Y S+ V+ + +C + FA
Sbjct: 271 NAALPKISYVKSIDVY-LGTCFVMVFA 296
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 93 NAAKPKVRYSNSLGVHEVSSCHMKNFA 13
NAA PK+ Y S+ V+ + +C + FA
Sbjct: 271 NAALPKISYVKSIDVY-LGTCFVMVFA 296
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 302 FKPDWEPKLNHSIKTRHNPTAH 367
+K WEPK +K H P+ H
Sbjct: 88 YKLRWEPKEYGGVKMLHVPSDH 109
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 302 FKPDWEPKLNHSIKTRHNPTAH 367
+K WEPK +K H P+ H
Sbjct: 88 YKLRWEPKEYGGVKMLHVPSDH 109
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.4 bits (48), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 93 NAAKPKVRYSNSLGVHEVSSCHMKNFA 13
NAA PK+ Y S+ V+ + +C + FA
Sbjct: 210 NAALPKISYVKSIDVY-LGTCFVMVFA 235
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 22.6 bits (46), Expect = 3.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 264 TRFYFLRL*VVCFLNQIGNRN*TIPLKLDTTRQHIRS 374
T F F + F+N I R T+PLK ++ ++S
Sbjct: 302 TIFLFAAMVEFAFVNTIYRRKKTVPLKKVNSKYILKS 338
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 509 IISSRPNLEDFQNDVLYEKLNINRNKRDANKK 604
IISS N N+ Y N N N + NKK
Sbjct: 80 IISSLSNNTIHNNNYKYNYNNNNYNNNNYNKK 111
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 509 IISSRPNLEDFQNDVLYEKLNINRNKRDANKK 604
IISS N N+ Y N N N + NKK
Sbjct: 80 IISSLSNNTIHNNNYKYNYNNNNYNNNNYNKK 111
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,810
Number of Sequences: 438
Number of extensions: 2932
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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