Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9o23
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.3  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.9  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    26   3.8  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   5.1  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    26   5.1  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   6.7  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 318 AFLLRRVSFNDNDNLDFFSKISSESNRDIDLMPQ 217
           +++  RVSFN ND    F  I+S+S   ++ MP+
Sbjct: 663 SYIPTRVSFNPNDTGGSFGTITSQSQFVVNEMPK 696


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 356 QHLLVKCWLDLEDFKSHFRNTDN-VRKNNFVFCKTQSCDLY 475
           Q L+  C+  L DFKS  ++T+N ++ NN    +  +  LY
Sbjct: 591 QILICWCYYRLNDFKSLIQHTNNLLQSNNASLLRRLAATLY 631


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 65  FWTRLHSKF--LTSIYRIKKLKIVAGERAHGPLCEKWLSETIG 187
           F  +L S++  L  I R K L   +  R  G LC+ WL +  G
Sbjct: 276 FSLKLDSEYDVLLEIGRSKHLGYCSSRRKSGELCKHWLDKRAG 318


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 324 VVAFLLRRVSFNDNDNLDFFSKISSESNRDID 229
           ++AF+L +V  N+   LD   KI + S+ DI+
Sbjct: 585 LLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIE 616


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 215 P*GMRSMSRLDSEDIFEKKSKLSLSLNDTLLKRKATTYFM 334
           P   R +S +    I E K KLSLS  + L +   T Y +
Sbjct: 78  PKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYIL 117


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 351 MVSMYCIKYVVAFLLRRVSFNDNDNLDFFSKISSESNRDID 229
           ++S  C  Y + FL    S ND+   D  +K+ +E   D D
Sbjct: 93  VISCSCTIYPLVFLHCCTSPNDSSTWDTLTKLKNEIINDFD 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,062
Number of Sequences: 5004
Number of extensions: 52648
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)